PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.47948 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 307aa MW: 33797.8 Da PI: 7.3199 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36.4 | 8.7e-12 | 198 | 227 | 27 | 56 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 +++++ LA++l+L rqV vWFqNrRa+ k Araip.47948 198 QKQKQALARQLNLRPRQVEVWFQNRRARTK 227 5799************************98 PP | |||||||
2 | HD-ZIP_I/II | 92.7 | 4.2e-30 | 197 | 262 | 25 | 91 |
HD-ZIP_I/II 25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 e+++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Araip.47948 197 EQKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELK-AL 262 789************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.345 | 144 | 229 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.5E-8 | 146 | 233 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-15 | 148 | 232 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.85E-12 | 148 | 230 | No hit | No description |
Pfam | PF00046 | 1.4E-9 | 198 | 227 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.67E-10 | 198 | 237 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 204 | 227 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.1E-24 | 229 | 272 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.0E-9 | 229 | 263 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGLDQDANNN NNNKSSSSGL ELVLGLSLTT TTATPPPPSS KPKPYSCHHE APEPSLTLGL 60 SGESFQQVLK SNNNKGAEEP TSGEMCRQAS SPHSSAVSSF SSGGCRVVGA CVKRERDLSS 120 CEEADGDGDG ERVSSRVSDE DEDGSNARKK LRLTKEQSAL LEDSFKQHST LNPVCNHNQS 180 TSLLIVNLID YYNVGNEQKQ KQALARQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK 240 CCETLTDENR RLKKELQELK ALKLAQPLYM PMPAATLTIC PSCERLSNDP PAKPHFYNPF 300 TNPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 229 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.47948 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016201581.1 | 1e-169 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 3e-84 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A444ZAT7 | 1e-159 | A0A444ZAT7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G40450.1 | 1e-115 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 5e-73 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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