PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.45253 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 259aa MW: 30103.5 Da PI: 5.2011 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 6e-18 | 26 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT.............................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.............................tWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd ll+++vk +G g W+tIar ++ gRt++++k++w+++ Araip.45253 26 KGPWTAEEDRLLIEYVKIHGEGrwnsvarlaeewkelqaemgelpetrpqeGWSTIARSLP-GRTDNEIKNYWRTH 100 79***********************************************************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.089 | 21 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-15 | 24 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 25 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 26 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-19 | 27 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.18E-11 | 28 | 101 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-4 | 89 | 140 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MYWGGNMGMG WGVMIEEEVG GGGWRKGPWT AEEDRLLIEY VKIHGEGRWN SVARLAEEWK 60 ELQAEMGELP ETRPQEGWST IARSLPGRTD NEIKNYWRTH FKKKVKNPSD AAEKAKNRLL 120 RRQQFQQQQQ LKQQQQQIQQ QQQQVQFNLD MKGIMMMNLL EMENHNNDHR RVPSISHQQE 180 PQDMYQQQSS TEEEHGYFYH PMFINNINGN NNDNYSPAAT ESSSEEILWD GLWNLDDVLG 240 NFTAASATSK PTTLVAPFC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.45253 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016177380.1 | 1e-131 | transcription factor MYB59 | ||||
Refseq | XP_025679876.1 | 1e-131 | transcription factor MYB2 | ||||
TrEMBL | A0A444XRK7 | 1e-130 | A0A444XRK7_ARAHY; Uncharacterized protein | ||||
STRING | XP_007144143.1 | 3e-75 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 9e-38 | myb domain protein 79 |