PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.44RH2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TALE | ||||||||
Protein Properties | Length: 550aa MW: 59783 Da PI: 7.6486 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.8 | 1e-09 | 345 | 382 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Araip.44RH2 345 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 382 664459******************************88 PP | |||||||
2 | BELL | 80.9 | 1.7e-26 | 228 | 279 | 21 | 72 |
BELL 21 krYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 k+ kqy++q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi Araip.44RH2 228 KKAKQYHNQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQI 279 5669***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-44 | 155 | 277 | IPR006563 | POX domain |
Pfam | PF07526 | 7.8E-31 | 160 | 276 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 323 | 386 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.16E-12 | 326 | 387 | No hit | No description |
SMART | SM00389 | 5.3E-9 | 326 | 390 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-17 | 327 | 393 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-29 | 329 | 392 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.1E-18 | 343 | 382 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MATYFHGNSE IQGGGVDGGL QTLVLMNPGY IQFSDTPPPP PPHGGNLMLL NSLAAAGNSS 60 LAPHAPLSQQ FLGVPLAAEH MQGHHDVSVA LHGYAPRGHY NLWNTIDPTT AARDATRATQ 120 GLSLSLPAMS GDDVRVSGGS PSSASGVTNG GGGVSGIQSV LLNSKYLRAT QELLEEVVNV 180 NNNNDAKVGV GESSSNGGNS GGDGSVGEGS EKRCAELSAT ERQEIQMKKA KQYHNQMQIV 240 ISSFEQAAGI GSARTYTALA LQTISKQFRC LKDAITGQIK AANKSLGEED YFGGGKIEGS 300 RLKYVDHHLR QQRAIQQLGM MHHNAWRPQR GLPERSVSVL RAWLFEHFLH PYPKDSDKHM 360 LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYLEEMKDHD MNNSNNNNVS EDNKSSKSNE 420 DPNNAKNSPP RDSNSESDTK KSFNSKQENN VSISTPTSQI GGNSRNNNNN NSSGFSFMGS 480 SELLDGITQG SSPKKPRSNE INIQLGRRLD HMSGEQHSNE FGAVNNTQNP HHSSAAFQSM 540 QNSKRWDWLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-16 | 332 | 390 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-16 | 332 | 390 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-16 | 332 | 389 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 332 | 389 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.44RH2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016184687.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_016184689.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_020972324.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-132 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | V7D1A0 | 0.0 | V7D1A0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007162972.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-112 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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