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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.42MZK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 399aa MW: 43463.6 Da PI: 6.5118 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.2e-05 | 50 | 69 | 2 | 21 |
HHHHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafe 21 r +h+ E+rRR++iN+++ Araip.42MZK 50 RSKHSVTEQRRRSKINERYV 69 899**************985 PP | |||||||
2 | HLH | 20.3 | 9.8e-07 | 117 | 149 | 19 | 55 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Araip.42MZK 117 RFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 149 69*********9....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.379 | 48 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-17 | 49 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.72E-7 | 50 | 153 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.5E-17 | 117 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-9 | 117 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MKGSRDAHEP SHMLSFLPLR LSISDLQLLC LVSGFVNADA KAVDKASVIR SKHSVTEQRR 60 RSKINERYVQ RASVISSVLS ASVFDVGALN HDASGCQAVN TVGIVICYED IGDLFFRFQI 120 LRDLIPHSDQ KRDTASFLLE VIEYVQYLQE KVQKYEGSYQ GWGHEPSKLM PWRNSHWRVQ 180 SFVGQPQAIK NGSGPVSPFP GKFDESNISI SPTMLSGNQN MIDTDQGRDI VSKASEGQTD 240 LASKGIALPL GMHPNMSVPV RSDGVLSHPL QGSVSEAQST ECPAASEPLS QQDELTIEGG 300 TISISSVYSQ GAVKNSNSYE YELLNNLTQA LQSAGLDLSQ ASISVQINLG KRANNGPSCG 360 TSSPKNHDMV PSSNQAFAQF RDAGSEDSDQ AQKRLKTFK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.42MZK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020979810.1 | 0.0 | transcription factor BIM2 | ||||
Refseq | XP_025654933.1 | 0.0 | transcription factor BIM2 isoform X1 | ||||
TrEMBL | A0A444Z4B0 | 0.0 | A0A444Z4B0_ARAHY; Uncharacterized protein | ||||
STRING | XP_007153463.1 | 1e-176 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1730 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-92 | BES1-interacting Myc-like protein 2 |