PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.426A8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 138aa MW: 15892.2 Da PI: 9.6991 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 44.2 | 3.2e-14 | 45 | 90 | 6 | 54 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 +f++eq++ Fe+++++ +++ +LA+ lgL+ rqV++WFqNrRa+ Araip.426A8 45 RFSDEQIR---CIFESESKLEPKKKIQLARDLGLQPRQVTIWFQNRRAR 90 67777765...57***********************************8 PP | |||||||
2 | HD-ZIP_I/II | 73.3 | 4.6e-24 | 41 | 101 | 1 | 64 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdye 64 e+krr+s+eq++++ Fe+e+kLep++K +lar+Lglqprqv +WFqnrRAR+ + ++E + + Araip.426A8 41 ENKRRFSDEQIRCI---FESESKLEPKKKIQLARDLGLQPRQVTIWFQNRRARIWLVETEIQIH 101 58*********985...999*********************************99999987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.27E-13 | 31 | 90 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-8 | 40 | 98 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.93E-11 | 43 | 92 | No hit | No description |
Pfam | PF00046 | 1.2E-11 | 44 | 90 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-14 | 53 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.438 | 55 | 94 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 6.3E-6 | 65 | 74 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 6.3E-6 | 74 | 90 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MMDGDDEFIQ ASKGKNVESF TCSEVALPQN KNSKKKKSKI ENKRRFSDEQ IRCIFESESK 60 LEPKKKIQLA RDLGLQPRQV TIWFQNRRAR IWLVETEIQI HMMPTPGVPR SCTQQANEPS 120 NTTSHGVQSD PSYLITLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.426A8 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029151796.1 | 7e-53 | homeobox-leucine zipper protein HOX19 isoform X5 | ||||
Swissprot | P46897 | 3e-20 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A444XMN8 | 7e-58 | A0A444XMN8_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A444XMV6 | 2e-58 | A0A444XMV6_ARAHY; Uncharacterized protein | ||||
STRING | XP_007136490.1 | 5e-35 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 4e-22 | homeobox 7 |
Publications ? help Back to Top | |||
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