PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.3Y33J

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 387aa MW: 45478.4 Da PI: 9.4726

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.3Y33J	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63	8.3e-20	28	114	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk+vGF ++++ +++ +++ +++ +C++egkr+++ + ++t++ t+ +C a++ ++++k+g w ++k+ l+H+H++ Araip.3Y33J 28 QFYQNYAKRVGFVTKIRFTRRVGKDKVPKNQMITCNREGKRKSRVSP---IEKTNPRTNYNCPARISIRLNKEGLWIISKVCLDHSHPCD 114 6****************************************9877...999********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-17	28	114	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	1.6E-5	262	295	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.73	262	298	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-5	273	300	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MESVLEEQNI EYVPKVGMCF GTIEDANQFY QNYAKRVGFV TKIRFTRRVG KDKVPKNQMI 60 TCNREGKRKS RVSPIEKTNP RTNYNCPARI SIRLNKEGLW IISKVCLDHS HPCDPEMTKL 120 LTRNREMTMH MCRVIERNDE AGVRPSKTYQ VLMGEAGDIY EERHRWVPIF LDNFFWAGMR 180 STQRKQQERE ADVEDYKSII PYATNSLIEK QFQGAYTNAK FKEVQKQFRK KANCILHLMK 240 AVSTSKVYSI LEDVSTSKER VYEVNYNAET KDITCMCQMF ESRGILCRHS LVVLGHERMR 300 EIPRRYILDR WSKLVKRRHS DIKSSHDPSL LNPKTERFDD LCSHSNSVAQ FASQTKETSD 360 ILYRYLDMAM AECQKHMLLT HHLMPMS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MESVLEEQNI EYVPKVGMCF GTIEDANQFY QNYAKRVGFV TKIRFTRRVG KDKVPKNQMI  60
TCNREGKRKS RVSPIEKTNP RTNYNCPARI SIRLNKEGLW IISKVCLDHS HPCDPEMTKL  120
LTRNREMTMH MCRVIERNDE AGVRPSKTYQ VLMGEAGDIY EERHRWVPIF LDNFFWAGMR  180
STQRKQQERE ADVEDYKSII PYATNSLIEK QFQGAYTNAK FKEVQKQFRK KANCILHLMK  240
AVSTSKVYSI LEDVSTSKER VYEVNYNAET KDITCMCQMF ESRGILCRHS LVVLGHERMR  300
EIPRRYILDR WSKLVKRRHS DIKSSHDPSL LNPKTERFDD LCSHSNSVAQ FASQTKETSD  360
ILYRYLDMAM AECQKHMLLT HHLMPMS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.3Y33J

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025678796.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444XQD3	0.0	A0A444XQD3_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-23	far-red elongated hypocotyls 3