PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

M-type_MADS

Protein Properties

Length: 231aa MW: 25913.2 Da PI: 8.0099

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.3GU5G	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.7	9.6e-16	9	51	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k i n+s+r t kR+ g++KKA E+S+LC+++++ ii+ s+ Araip.3GU5G 9 KYIANDSKRRATQKKRKSGLIKKADEISTLCGVDACAIIYTSD 51 5699***********************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.675	1	50	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.3E-20	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.55E-32	2	85	No hit	No description
SuperFamily	SSF55455	6.15E-25	3	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-10	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-15	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-10	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-10	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MARKKVELKY IANDSKRRAT QKKRKSGLIK KADEISTLCG VDACAIIYTS DDPQPEVWPS 60 PSGVNRVISR FKEMPELEQS KKMMSQESFL RQRIQKGQDQ LKKLKNENRK KEMNNLMFQS 120 LGGYQSLDNA TIIDLNDLAW IIDQNINEVN KQISKLQGQE GTSSNNNGVA TINGEQAQVD 180 NIINGGVFPF VDNIINGEQA QVDNIINGGV FPFVDAANNF QNDYCPTPFN P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVELKYIANDSKRRATQKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.3GU5G

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016203622.1	1e-169	agamous-like MADS-box protein AGL80
Refseq	XP_025631096.1	1e-169	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	5e-49	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A445AMG2	1e-140	A0A445AMG2_ARAHY; Uncharacterized protein
STRING	XP_004500454.1	4e-71	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF452	33	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-44	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]