PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.3280G | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 439aa MW: 49994.7 Da PI: 9.0799 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 48.8 | 2.4e-15 | 48 | 134 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk++ Fs+r+++++k+ ++i+++ +Cs+egk +++ + +++t+ + +C a++ ++ k w ++k++l+H+H+++p Araip.3280G 48 KFYKDYAKDAYFSTRVRSTNKK--GNKIKNQLITCSREGKWKSKISP---TEKTNLTAGLNCSARIYIHTLKdVCAWIISKVVLHHSHPCCP 134 6****************98887..77799************998877...89999*************9988789**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-12 | 48 | 134 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9 | 226 | 262 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0019 | 237 | 264 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MDDSTSDCQL NQGEVDFEFE SNEPFSVVDE QLIPKVGMTF KTLEDAAKFY KDYAKDAYFS 60 TRVRSTNKKG NKIKNQLITC SREGKWKSKI SPTEKTNLTA GLNCSARIYI HTLKDVCAWI 120 ISKVVLHHSH PCCPTQAEML KQHKELSMEQ AERESDATDF HTVIPCAIKS SIEAQFQDVY 180 THQKFREVQA QFRGKANCIT RLTNSALGYS VYEVGEQVSS SIFNKFMVTY DSVAAEVKCQ 240 CLLFESRGIL CRHALSMLSF ERVSQVSPRY ILERWSKKVK RRHTHIKSSH DEPLLEPRSK 300 RFDELVFRSQ NICEFASESE ELTAILHHAY DNVMVEMESL KAKRKGTSSL SHKDANLESV 360 NDLQSPPRIR TRGRPKNRLG SKLDKQIANA SKKKKTKALN ELNLFDAASV VRSNSSQYQG 420 RVMNYQFRES AAADNSLGV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.3280G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 0.0 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020986710.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
TrEMBL | A0A445AIN5 | 0.0 | A0A445AIN5_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.2 | 2e-18 | FAR1-related sequence 4 |