PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.31NKT

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 578aa MW: 66752 Da PI: 8.3544

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.31NKT	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40	1.3e-12	98	166	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 +fY++YAk++GF ++++ +++ +++ +++ +C++egkr+++ + ++t++ t+ +C a++ ++++k Araip.31NKT 98 QFYQNYAKRIGFVTKIRFTRRVGKDKVPKNQMITCNREGKRKSRVSP---IEKTNPRTNYNCPARISIRLNK 166 6****************************************9877...999*************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-9	98	166	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	4.7E-5	324	356	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.297	324	360	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0035	335	362	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MESVLEEQNI ECINKHNDDY DYEFLSSQSM LYVQILHPKP FPYFLAVTLH LRLCLLFKGI 60 PLLYPKNALN MFYDFLGVGA QFASNVGMCF GTIEDANQFY QNYAKRIGFV TKIRFTRRVG 120 KDKVPKNQMI TCNREGKRKS RVSPIEKTNP RTNYNCPARI SIRLNKEVIE RNDEAGVRPS 180 KTYQVLVDIY EERHRWVPIF LDNFFWAGMR STQRSESMHS YFDKFINNKS LLIQFVKQYD 240 NCLGWKEQQE REVDVEDYKS IIPCATNSLL EKQFQGAYTN AKFKEVQKQF RKKANCILHL 300 MKAVSTSKIY SILEDVSTSK ERVYEVNYNA ETKDITCMCQ MFESRGILCR HSLVVLGPEC 360 VREIPRRYIL DRWSKLVKRR HSDIKSSHDP SLLNIKTERF DDLCSHSNSV AQFASQTKET 420 SDILHRYLDM AMAECQKHVA NSSSNANELD NLLTLEDGGK DGGKDVMSIF VGGCIISIQD 480 IKSPPYVSTK GRPTNRLGSE KDKMIKKKTE AKKRKSEITE KEDNQHIGDS QSLPFNEQLQ 540 DANYNVNEGF ESDSMGGSMG EFMSLLNSIH SYQFSNVD

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MESVLEEQNI ECINKHNDDY DYEFLSSQSM LYVQILHPKP FPYFLAVTLH LRLCLLFKGI  60
PLLYPKNALN MFYDFLGVGA QFASNVGMCF GTIEDANQFY QNYAKRIGFV TKIRFTRRVG  120
KDKVPKNQMI TCNREGKRKS RVSPIEKTNP RTNYNCPARI SIRLNKEVIE RNDEAGVRPS  180
KTYQVLVDIY EERHRWVPIF LDNFFWAGMR STQRSESMHS YFDKFINNKS LLIQFVKQYD  240
NCLGWKEQQE REVDVEDYKS IIPCATNSLL EKQFQGAYTN AKFKEVQKQF RKKANCILHL  300
MKAVSTSKIY SILEDVSTSK ERVYEVNYNA ETKDITCMCQ MFESRGILCR HSLVVLGPEC  360
VREIPRRYIL DRWSKLVKRR HSDIKSSHDP SLLNIKTERF DDLCSHSNSV AQFASQTKET  420
SDILHRYLDM AMAECQKHVA NSSSNANELD NLLTLEDGGK DGGKDVMSIF VGGCIISIQD  480
IKSPPYVSTK GRPTNRLGSE KDKMIKKKTE AKKRKSEITE KEDNQHIGDS QSLPFNEQLQ  540
DANYNVNEGF ESDSMGGSMG EFMSLLNSIH SYQFSNVD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.31NKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016177812.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445B541	0.0	A0A445B541_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	4e-35	far-red elongated hypocotyls 3