PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Araip.31N0W

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 325aa MW: 37365.5 Da PI: 10.3474

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.31N0W	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.1e-05	120	143	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C Cg+ F +++ L++H + H Araip.31N0W 120 HVCRVCGRKFYTNEKLVNHFKQlH 143 79*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.302	120	148	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	122	143	IPR007087	Zinc finger, C2H2
CDD	cd06167	0.00181	223	254	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MGSILKFRNI YGSFKCFHSK PNWGSGASDK TPKLEPNRNN NRVGIFWDLD NKPPNSIPPF 60 EVANKLRIVA SSFGVVRHMV AYANSHTFTS VPHAVRQWRK EKELYNRLES KGVIKRNESH 120 VCRVCGRKFY TNEKLVNHFK QLHESEQMKR VNQIASARGN RRVKLVAKYS MKMKKYKKAA 180 RDILTPRVGY GLADELKRAG FWVQSVLDKP QLRIMHWKVT WWVECIVVVS DDYDFANVIR 240 EAKLRCLKTV VIGDTIDGVH TVAKMFTLMI PVLVNFCVSK YRMVLFSGIA AEALVYGEAE 300 GAENDENLFR NICLLLEPRL SLTEP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.31N0W

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025632078.1	0.0	uncharacterized protein LOC112726774 isoform X1
Refseq	XP_025632079.1	0.0	uncharacterized protein LOC112726774 isoform X1
Refseq	XP_025632080.1	0.0	uncharacterized protein LOC112726774 isoform X1
TrEMBL	A0A445ADT1	1e-161	A0A445ADT1_ARAHY; Uncharacterized protein
STRING	AES71977	1e-118	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7500	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	4e-83	C2H2 family protein