PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2R7TR
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 417aa    MW: 46532.6 Da    PI: 7.2252
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2R7TRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-18331364134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Araip.2R7TR 331 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 364
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.648325361IPR000679Zinc finger, GATA-type
SMARTSM004012.6E-16325375IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-14328386No hitNo description
Gene3DG3DSA:3.30.50.103.0E-14329362IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.14E-15330377No hitNo description
PROSITE patternPS003440331356IPR000679Zinc finger, GATA-type
PfamPF003201.9E-16331364IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MSEDVGNNMK DSWFFEKNFN GLSDEAFDDV FSFLDFPLED VEPNVVEEDW DAQFKRIEPC  60
YDVFSVSSTV LCSDKTQNEK PQLGGSFSGS VSILICNYGV WNADFDNGQE AILVIPSWVV  120
YWENMAHDLM STAELISQCT PLCTRSWNFT GLHSCMARGE KGRKLEVAQT FLLVYTKLVV  180
KSNEVSPIKQ LDETAGLDVG KTILNQNSSL NGKDLHQLQT YSPVSVFESS STSSAENSNF  240
DLPAIPVKRA RSKRQRASSF SPLFVIPSVP TSPAWQIYEM KVDPESNLGT HHAGKSLNNT  300
KKQRKKDLPV LSVHNDMKRS SSQEPVPTRK CMHCEVTKTP QWREGPMGPK TLCNACGVRY  360
RSGRLFPEYR PAASPTFVPS VHSNCHKKVI EMRSKGIQAS LRNPLSAMSN LHGNSVG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2R7TR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169708.11e-162GATA transcription factor 11
RefseqXP_025671380.11e-162GATA transcription factor 11
TrEMBLA0A444Y7R01e-160A0A444Y7R0_ARAHY; Uncharacterized protein
STRINGGLYMA12G29730.11e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-40GATA family protein