PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2F21P
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 496aa    MW: 54643.9 Da    PI: 8.6152
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2F21PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-054668123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C  C+k F r  nL+ H r H
  Araip.2F21P 46 FVCDVCNKGFQRDQNLQLHRRGH 68
                 89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-54568IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.54E-74568No hitNo description
PROSITE profilePS5015710.9074668IPR007087Zinc finger, C2H2
SMARTSM003550.0254668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SMARTSM0035519088118IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.54E-7118143No hitNo description
SMARTSM00355250123143IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MTSASSEISA STSLPIKKKR NLPGHPDPDA EVIALSPKSL LATNRFVCDV CNKGFQRDQN  60
LQLHRRGHNL PWKLKQRSNK EIIRKKVYVC PEPTCVHHDP SRALGDLTGI KKHFCRKHGE  120
KKWKCDRCSK RYAVHSDWKA HSKICGTREY KCDCGTIFSR RDSFIAHRAF CDALAQESTK  180
AITTLFNPSS SVKKELQEVN LRSENRPLWL SYSTSVGGEG SHGRVVHNNN NNNNNNNSTL  240
LFSSPPPPST SLLSTMIHHE NPNPNITMLP PNNNALLFEG MASSYSSSHN LMSATALLQK  300
ASEIGATVSL GKPYLQAHHH HRGHVPESTT TGYGTLSSMA TSSSSVSGLL DMDSREEIGT  360
GMMFARHHHH GFLASYESYK ADEHTKEASL LVHNDMMDGT STFEEALMRG IMNHPTREDA  420
DNNSNNFDEL VSRSAGSRGG GGGGGGGGGV NDETRDFLGI GVFSQRDIFN ISGLHHHHLD  480
SSSYGNQNQK QPPWQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-31119180364Zinc finger protein JACKDAW
5b3h_F6e-31119180364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17285KLKQRSNKEIIRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2F21P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016163842.10.0protein indeterminate-domain 12
TrEMBLA0A445C8I50.0A0A445C8I5_ARAHY; Uncharacterized protein
TrEMBLA0A445C8J80.0A0A445C8J8_ARAHY; Uncharacterized protein
STRINGVIT_04s0008g01160.t011e-137(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-109indeterminate(ID)-domain 2