PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2DH61
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 488aa    MW: 55181 Da    PI: 8.7358
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2DH61genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.11.8e-103464991
         FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                 +++r+++++tr+gC  ++++k +  +g+w v+ +++eHnHel p
  Araip.2DH61  3 DRKREHKVVTRCGCPVEMRIKPKGdSGRWFVSFFVEEHNHELLP 46
                 578999***************9998****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-7346IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.916158193IPR007527Zinc finger, SWIM-type
SMARTSM005750.0039168195IPR006564Zinc finger, PMZ-type
PfamPF044343.2E-5170190IPR007527Zinc finger, SWIM-type
PfamPF139347.0E-10407488IPR025151ELYS-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MADRKREHKV VTRCGCPVEM RIKPKGDSGR WFVSFFVEEH NHELLPMKYV DYLPAHRRFV  60
ERRYGILEFV TNFQRCVDFL RDNEEELDFR SSYGTPVLQT QFPELEKSGA INFTREIFSR  120
YRESLKRCVR ITILECIERD DRCVYVTQKY RRPNSRWDVV HMKGKEEFLC SCLRMESFGL  180
PCVHILAVLV RLDIDSLPKS LVLARWSKAA KEDLCYEPLS SRYGDAGVLY RSRVGAFLQH  240
CKRLAKVACI REEDFRQYLA KVVEDTCWLE KKNGLGGAVA GNGAGNSGGG VRDPISVKTK  300
GTGRGNEPLG CRGIKRRKCS TCGCVGHRRT RCPNAPPTSA PSTQGEGSVK VGRRENCVDD  360
PCSGFDVLIG GYSQVLIQRG LLMVQVCVIG HADVLGCGLV VMVCLNISLR DAVTAVRARI  420
ECGLLTEAFM HQRNLCTRVK EKSFNNGSPL QTADVPKGLF SYWVEVLVTE ICCLCIRRNL  480
VDRMLELP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127ESLKRC
2311316RGIKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2DH61
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015961748.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444YED90.0A0A444YED9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11042217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-12FAR1-related sequence 5