PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2BR22
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 397aa    MW: 45498.4 Da    PI: 8.871
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2BR22genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.42.6e-093405490
         FAR1 54 traetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                 +r+ tr+gC a++kv+ ++ +g+w v+k+  eHnHe+ 
  Araip.2BR22  3 PRPITRCGCGAQIKVHVDQsTGRWFVDKFCDEHNHEML 40
                 6889*************999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-6340IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.977170206IPR007527Zinc finger, SWIM-type
SMARTSM005750.0033181208IPR006564Zinc finger, PMZ-type
PfamPF044344.5E-5182205IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDPRPITRCG CGAQIKVHVD QSTGRWFVDK FCDEHNHEML TARFRGLLRS HRVIKEGDMH  60
QINSMRKAGM RVPTIFRAFP TQCGGFETHY LEFMRRRELV ADYRSVYGQP IFKSKLEALE  120
SYAAIVYTKD VFELFREVLL LSSNVRVVSC KKTSTCSLFE VTMYCRDRSW SVAWDKADDE  180
FTCSCLRMES FGIPCVHMVG VFVYLNITQL PVKTICERWT KKAKQAAVDP SGQVGEIPDA  240
AYMSMHAALL NDCRELIKLA CQYFEDYSEL KSMIRNQSNV LREKHRLRVS IADCGEKVSV  300
RDPLRARHKG CGQRGLTARE KTRRVQRCSK CGKASHNSRK CAEFGSERRR GMATAMEGWE  360
NTSAAKEGNY TDEMNVSGIY ILQESYLNLC VAYFGMT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317325AREKTRRVQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2BR22
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016192111.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
RefseqXP_025638539.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A2J00.0A0A445A2J0_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1381925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-12FAR1-related sequence 3