PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.2B2WU

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 557aa MW: 63180.4 Da PI: 6.2497

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.2B2WU	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.6	3.2e-31	90	181	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka l vk++++gkw v+ ++ eHnHel+p Araip.2B2WU 90 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKMHDSGKWIVSGFVREHNHELVP 181 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-29	90	181	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	3.8E-11	330	376	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.202	342	378	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-7	353	380	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MDNEVLEFDI GLEGGEGECE DDEGDIEHPM AMAMAIEEDE LADADRGRGT ATSGSGGEIY 60 VPEGFGAGDL LDLEPYEGME FESEEAAKAF YNSYARRVGF STRVSSSRRS RRDGAIIQRQ 120 FVCAKEGFRN LNEKRTKDRE IKRPRTITRV GCKAALSVKM HDSGKWIVSG FVREHNHELV 180 PPDQVHCLRS HRQISGAAKT LIDTLQAAGM GPRRIMSALI KECGGISKVG FTEVDCRNYM 240 RNNRQRSLEG DIQLFFKLYE KALDSRNEKE VRADYDTMNS SPVLKTPSPM EKQASELYTR 300 KIFMRFQEEL VGTLTFMASK TEDDGEVVTY HVAKFGEDHK AYYVKFNVLE MKASCSCQMF 360 EFSGLVCRHV LAVFRVTNVL TLPAHYILKR WTRNAKSSVT LEEHSCDIYS YYLESHTVRY 420 NTLRHVAFKF VDEGAKSPET YDVAMGALQE ATKRVVQVMQ SEGRILINNG KVRSHLQIDE 480 SHTNSRSGHE EGNLGQHMSE DDMDKSIREL MNELEFANRK CEIYRSNLLS VLKAVEDHKL 540 ELSIKVENIK ISIKDGL

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MDNEVLEFDI GLEGGEGECE DDEGDIEHPM AMAMAIEEDE LADADRGRGT ATSGSGGEIY  60
VPEGFGAGDL LDLEPYEGME FESEEAAKAF YNSYARRVGF STRVSSSRRS RRDGAIIQRQ  120
FVCAKEGFRN LNEKRTKDRE IKRPRTITRV GCKAALSVKM HDSGKWIVSG FVREHNHELV  180
PPDQVHCLRS HRQISGAAKT LIDTLQAAGM GPRRIMSALI KECGGISKVG FTEVDCRNYM  240
RNNRQRSLEG DIQLFFKLYE KALDSRNEKE VRADYDTMNS SPVLKTPSPM EKQASELYTR  300
KIFMRFQEEL VGTLTFMASK TEDDGEVVTY HVAKFGEDHK AYYVKFNVLE MKASCSCQMF  360
EFSGLVCRHV LAVFRVTNVL TLPAHYILKR WTRNAKSSVT LEEHSCDIYS YYLESHTVRY  420
NTLRHVAFKF VDEGAKSPET YDVAMGALQE ATKRVVQVMQ SEGRILINNG KVRSHLQIDE  480
SHTNSRSGHE EGNLGQHMSE DDMDKSIREL MNELEFANRK CEIYRSNLLS VLKAVEDHKL  540
ELSIKVENIK ISIKDGL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.2B2WU

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015972861.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_016191025.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_025640236.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	1e-133	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A200PR76	0.0	A0A200PR76_9MAGN; FAR1 DNA binding domain
STRING	GLYMA14G00240.2	1e-179	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-135	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]