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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.24AK5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HSF | ||||||||
Protein Properties | Length: 302aa MW: 34734.4 Da PI: 7.8085 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.3 | 4e-36 | 58 | 150 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+i+ed+++++++sws+ +nsfvv+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgFkkv+ ++ weF+++ F +g++ ll++ik Araip.24AK5 58 FLTKTYDIVEDPSTNHIVSWSKGNNSFVVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEMFLRGQRVLLKNIK 145 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Araip.24AK5 146 RRKTN 150 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 6.67E-36 | 53 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.3E-60 | 54 | 147 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.2E-39 | 54 | 147 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.4E-19 | 58 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.7E-31 | 58 | 147 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-19 | 96 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 97 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-19 | 109 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MNNPDDHGVG RVMKEEYLGE GSCSFSYPMV VDVPPPPPPP PPPPHPMEGL NESGPPPFLT 60 KTYDIVEDPS TNHIVSWSKG NNSFVVWDPQ AFSITLLPRF FKHNNFSSFV RQLNTYGFKK 120 VDPDRWEFAN EMFLRGQRVL LKNIKRRKTN QTHHHHQQGL DPCVEVGRFG GLDGELNRLR 180 RDRQVLMAEL VKLRQQQQAT KSQIQAMEVK LRKTEQKQQQ MMTFMARAMQ NPNFVQQLVQ 240 QKDWRKELEE AFSNKRMRPI HQGPSNNHDG LLGFEDEDVL AAAEDVDVLA EQLGYLASSP 300 HK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-25 | 53 | 150 | 15 | 123 | Heat shock factor protein 1 |
5d5u_B | 2e-25 | 49 | 149 | 17 | 131 | Heat shock factor protein 1 |
5d5v_B | 2e-25 | 49 | 149 | 17 | 131 | Heat shock factor protein 1 |
5d5v_D | 2e-25 | 49 | 149 | 17 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 146 | LKNIKRR |
2 | 177 | 182 | RLRRDR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.24AK5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025676092.1 | 0.0 | heat stress transcription factor A-6b-like | ||||
Swissprot | Q9LUH8 | 1e-114 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A371E2E8 | 1e-135 | A0A371E2E8_MUCPR; Heat stress transcription factor A-6b (Fragment) | ||||
STRING | GLYMA20G28870.1 | 1e-132 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-108 | heat shock transcription factor A6B |