PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.21NA4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 228aa MW: 25644.9 Da PI: 6.1228 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.7 | 1.6e-17 | 112 | 199 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY +YAk++GF +++++++ k ++ +++ C++ g +e++ k+ r+++ + gCka++ vk +k + w++ k++l H+H+++ Araip.21NA4 112 DFYVTYAKKAGFATKIRTTTFDKITKAPVNQAIHCNRDGIHESRVKA---PMRKNMISAAGCKARIYVKFDKdVQDWVLFKVDLTHSHPCS 199 6*******************************************999...899999**************99899*************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-15 | 112 | 200 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAESQEERVS SEGPPLCTSP TRNSLMEVDI AEPLVCVASD VSENLSYEQE YLASDVAGHG 60 HKSNKATQLS DVTNVGSEEM ELGDELLDHG FLQEDEIPRV GMRFAQLQMA HDFYVTYAKK 120 AGFATKIRTT TFDKITKAPV NQAIHCNRDG IHESRVKAPM RKNMISAAGC KARIYVKFDK 180 DVQDWVLFKV DLTHSHPCSP RKAVHYHEYR KLTMHAKYVI EDNDEAGI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.21NA4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016178401.1 | 1e-146 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Refseq | XP_025685258.1 | 1e-146 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A445AIG7 | 1e-161 | A0A445AIG7_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17976 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-11 | FAR1 family protein |