PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.20ERS

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 477aa MW: 54991.2 Da PI: 8.0075

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.20ERS	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.5	3.2e-11	51	129	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 kfY++YAk + Fs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ ++++l+H+H+++p Araip.20ERS 51 KFYRNYAKAADFSTRVQSTNRK--GNEIKNQLITCSREGKWKSKISL---TEKTNPTAGLNCPARIYIHTL-------KDVVLDHSHPCCP 129 6**************98887..8889**********99887...8999************987.......7888999998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-8	51	129	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPEPLSV VDDQFVSKVG MTFTTLEDAG KFYRNYAKAA 60 DFSTRVQSTN RKGNEIKNQL ITCSREGKWK SKISLTEKTN PTAGLNCPAR IYIHTLKDVV 120 LDHSHPCCPS KAEMLKQHRE LSMSIRRTIE NNEEADCHIW VPIYLDHHFW AGMRSTQRSE 180 SMHSFFNKFI TRNSSLIQFV KQYDNCLGSR EQAERESDTA DFHTVIPCAT KSSIEAQFQD 240 VYTHQKFREV QAQFRGKANC ITRLTNSALG YSVYEVGEQV SISIFNKFVV TYDLVAAEVK 300 FQFLLFESRG ILCRHALSVL SFEQVSQVSP RYILERWSKK VKRRHTHIKN SHDEPLLEPR 360 SKRFDQLVFR LQNICEFASE LEELTVILHR AYDNVMAEME SLKVKRKGTS SLSHEDANLE 420 SINELQSPPR IRTRGCPKNR IANATKKKKT KVLSECQHPE NLSDNMDSIT TRMAWTV

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MDDSTSDCQL NQGEVDYEFE SNEVPEPLSV VDDQFVSKVG MTFTTLEDAG KFYRNYAKAA  60
DFSTRVQSTN RKGNEIKNQL ITCSREGKWK SKISLTEKTN PTAGLNCPAR IYIHTLKDVV  120
LDHSHPCCPS KAEMLKQHRE LSMSIRRTIE NNEEADCHIW VPIYLDHHFW AGMRSTQRSE  180
SMHSFFNKFI TRNSSLIQFV KQYDNCLGSR EQAERESDTA DFHTVIPCAT KSSIEAQFQD  240
VYTHQKFREV QAQFRGKANC ITRLTNSALG YSVYEVGEQV SISIFNKFVV TYDLVAAEVK  300
FQFLLFESRG ILCRHALSVL SFEQVSQVSP RYILERWSKK VKRRHTHIKN SHDEPLLEPR  360
SKRFDQLVFR LQNICEFASE LEELTVILHR AYDNVMAEME SLKVKRKGTS SLSHEDANLE  420
SINELQSPPR IRTRGCPKNR IANATKKKKT KVLSECQHPE NLSDNMDSIT TRMAWTV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.20ERS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444Y6D9	0.0	A0A444Y6D9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-28	far-red elongated hypocotyls 3