PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1YM3E
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 330aa    MW: 37289.4 Da    PI: 6.7286
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1YM3EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12193218126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y   +C+++ +tG+C yGd+CkF+H+
  Araip.1YM3E 193 YQPDICKDYKETGYCGYGDSCKFMHD 218
                  67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9191223IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7192219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878192220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12193223IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10193218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.9E-13255310IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139208.3E-9268310No hitNo description
SuperFamilySSF578501.88E-12268311No hitNo description
CDDcd001623.42E-8269310No hitNo description
PROSITE profilePS5008910.409269307IPR001841Zinc finger, RING-type
SMARTSM001843.6E-4269306IPR001841Zinc finger, RING-type
PROSITE patternPS005180284293IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MADSDEVAKS AENQQTEQVC SFFRKPINKK NIRKRAIDSE DEGDDSKNEN SLLHAQKKAP  60
KPDNKLYFST GPSKSSVSTE PSEESEKTGF HFESSKEIQV QHDSKATATL ETETDFSRDA  120
RAIRERALKQ AEESLKGKGT SSEDGKLYKG MNSYKDYKAG FRREQTIASE KAGGSHGPLR  180
ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQLEK EWDEAEKARR  240
MRLAAGEDAD EESADLADSD DEDALPFACF ICRKPFADPV VTKCKHYFCE HCALKHHAKN  300
KKCFVCNQPT LGIFNVAHEI RKKMAEDKDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-68103324113317RING finger protein 113A
5z58_M3e-68103324113317RING finger protein 113A
6ff4_t3e-68103324113317RING finger protein 113A
6ff7_t3e-68103324113317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1YM3E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016183074.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_020971264.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_025632420.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-170C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A445AEU90.0A0A445AEU9_ARAHY; Uncharacterized protein
STRINGXP_007134882.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-153C3H family protein