PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1TT3T
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 824aa    MW: 93618.6 Da    PI: 9.239
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1TT3TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.4e-131399595
                 -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3  5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                  +++ +l++g l++ ++f++eh +g+  +   + l  ++g +W++    +k++  + + +GWkeF++   L+   +++Fk++g+s+f+  + 
  Araip.1TT3T 13 IVNETSLQNGELRIRRSFVSEHwQGI-SS--PVLLVLPNGSEWKMDW--EKRDADVCFVQGWKEFAEFYSLEKEQVLMFKYEGKSRFNVIIL 99
                 5689999***************9555.24..48888999********..*********************************9999954443 PP
2B343.94.4e-142332924098
                  ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3  40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                  + ++r W  k++   + g+++lt+GWk+Fv++n+Lk +D++vF+ +++ ++ +++v ++r
  Araip.1TT3T 233 TDESRPWHAKISKHDNNGQIMLTTGWKQFVRDNNLKLNDVCVFEKTRNsEGLSFRVIIYR 292
                  34679******88778888*************************8888677777777766 PP
3B340.64.6e-13351431490
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  +l++s + +s+   +p  fa+++  +k++   lt  +  +r We+kl y  + +   l++GW +Fvk+ +Lke D ++F+l++r++f
  Araip.1TT3T 351 ALKQSQTKRSA--HIPYGFAKKYL-QKAKA--LT-LQIGNRIWEIKLDYYPRHSYARLSSGWDKFVKDCNLKEADECTFQLIDRENF 431
                  55555555555..9*********4.44453..44.45677*******7777776799*************************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-173102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-174102IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-9999No hitNo description
PROSITE profilePS5086311.2239102IPR003340B3 DNA binding domain
SMARTSM010194.9E-1110102IPR003340B3 DNA binding domain
PfamPF023625.6E-101498IPR003340B3 DNA binding domain
SMARTSM010190.008147294IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-16184303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-15189293IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.899195294IPR003340B3 DNA binding domain
CDDcd100172.41E-14232292No hitNo description
PfamPF023626.6E-12233293IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-14344431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-13348433IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-13348438No hitNo description
SMARTSM010192.6E-8348439IPR003340B3 DNA binding domain
PfamPF023628.3E-11351431IPR003340B3 DNA binding domain
PROSITE profilePS508639.982363439IPR003340B3 DNA binding domain
CDDcd053012.38E-107447784No hitNo description
SuperFamilySSF522837.37E-22448587No hitNo description
PfamPF003893.3E-17464784IPR006139D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Gene3DG3DSA:3.40.50.7208.0E-24471565IPR016040NAD(P)-binding domain
SuperFamilySSF517352.61E-44551624IPR016040NAD(P)-binding domain
PfamPF028261.3E-8560615IPR006140D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain
Gene3DG3DSA:3.40.50.7202.8E-45566762IPR016040NAD(P)-binding domain
SuperFamilySSF517352.61E-44653761IPR016040NAD(P)-binding domain
PfamPF028269.6E-32664760IPR006140D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009854Biological Processoxidative photosynthetic carbon pathway
GO:0042631Biological Processcellular response to water deprivation
GO:0055114Biological Processoxidation-reduction process
GO:0071482Biological Processcellular response to light stimulus
GO:0005777Cellular Componentperoxisome
GO:0003677Molecular FunctionDNA binding
GO:0008266Molecular Functionpoly(U) RNA binding
GO:0008465Molecular Functionglycerate dehydrogenase activity
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MSSPPGPIHF FQIVNETSLQ NGELRIRRSF VSEHWQGISS PVLLVLPNGS EWKMDWEKRD  60
ADVCFVQGWK EFAEFYSLEK EQVLMFKYEG KSRFNVIILG RSGLEREYPL LNGTLEAEGS  120
GNSKRPNSPL RKKRRTNTEE EARFNEYSHN ARPRDRDGRR IFLKSEASNN VEAPKHAESS  180
SALERARAFS SKNLWFYRRM RPAYINNYLL FRAEDYVTQE ERKENEFLSL WVTDESRPWH  240
AKISKHDNNG QIMLTTGWKQ FVRDNNLKLN DVCVFEKTRN SEGLSFRVII YRATQESTNI  300
PSQDGANQSN QTNVRNSFAE RGHEGTSKEY SKNYKRRGRA SKWTEDQFTI ALKQSQTKRS  360
AHIPYGFAKK YLQKAKALTL QIGNRIWEIK LDYYPRHSYA RLSSGWDKFV KDCNLKEADE  420
CTFQLIDREN FVFDPVSIEV WNPNGKYRVV STKPMPGTRW INLLIQQDCR VEICTQKKTI  480
LSVEDIIQLI GDKCDGVIGQ LTEDWGEELF KALSRAGGKA FSNMAVGYNN VDVNVATKYG  540
VAVGNTPGVL TETTAELAAS LTLAAARRIV EADEFMRAGL YDGWLPHLFV GNLLKGQTVG  600
VIGAGRIGSA YARMMYSVSD FTTKTLIKLM VMPDDNICIL CQLDSKTYGE FLKANGEKPV  660
TWKRASSMDE VLQQADIISL HPVLDKTTYH LVNKERLSKM KKEAILINCS RGPVIDEAAL  720
VDHLRENPMF RVGLDVFEDE PYMKPGLSEM KNAIVVPHIA SASKWTREGM ATLAALNVLG  780
KIKGYPVWFD ANRVEPFLNE NAPPPAASPS IVNAKALGLP VSKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5aov_A4e-4948478437314GLYOXYLATE REDUCTASE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.1TT3T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1415761e-175BT141576.1 Medicago truncatula clone JCVI-FLMt-19P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020966638.10.0B3 domain-containing protein LOC_Os12g40080-like
RefseqXP_025677105.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A371FNP70.0A0A371FNP7_MUCPR; Glycerate dehydrogenase (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF952122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-14B3 family protein