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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Araip.1SH3C |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family |
C3H |
Protein Properties |
Length: 453aa MW: 51054.4 Da PI: 5.7069 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Araip.1SH3C | genome | NCGR_PGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 21.4 | 4.3e-07 | 3 | 24 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
t++C+f+ar G C G++C F H
Araip.1SH3C 3 TRICKFYAR-GACLKGEQCDFYH 24
89*******.************* PP
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2 | zf-CCCH | 24.3 | 5.6e-08 | 34 | 56 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+ +C f+++ G C yG+rC++ H+
Araip.1SH3C 34 QQICTFHQK-GLCAYGSRCRYKHV 56
678999999.*************6 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 14.352 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-4 | 2 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-5 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-7 | 3 | 25 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.024 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.788 | 32 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-5 | 34 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 129 | 153 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.455 | 133 | 154 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 9.42E-13 | 184 | 263 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 5.8E-10 | 191 | 258 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 4.43E-4 | 195 | 258 | No hit | No description |
Pfam | PF00097 | 5.4E-7 | 196 | 256 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.135 | 196 | 257 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 2.1E-5 | 196 | 256 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 220 | 229 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.52 | 286 | 314 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.85 | 286 | 315 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 453 aa
Download sequence Send
to blast |
MSTRICKFYA RGACLKGEQC DFYHERKDTD VSGQQICTFH QKGLCAYGSR CRYKHVNVSQ 60 ASSSANGCQS VVLDSAAAHT IQGASSSWVP KATKISPSDK HARRSLHKHQ DYLGNGDVSE 120 SSTSSAIPSE HLLCTFAAAN CPLGDKCSRV HGNQCLYCRK YCLHPTDRRV KDNHLRTCEK 180 KEKYLQSLKD SQEIECNVCL ERVLSKPKPA ECKFGLLPEC DHAFCISCIR NWRSSAPTSG 240 MDFNNTTNTV RTCPVCRKLS YFVIPSGIWY STKEEKQEII DNYKANCKLI DCKHFNFGDG 300 NCPFGTSCFY KHTVKPGSYT WIHKRPPPRR RPNNLDMYDV LDMLGDVDLS GGELYSIMRD 360 NDMFDEMDPY EMMAISDMLV TGPGPCPFDS EEDDDVDFIR MTSLAEALAS GVDDFGPDDF 420 RNDALDPMEA ALFSMMMHSN IEEDEEDSDD EIY
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