PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Dof

Protein Properties

Length: 502aa MW: 54863.8 Da PI: 6.2483

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.1P1MT	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.2e-39	137	196	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Araip.1P1MT 137 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNS 196 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	134	194	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-32	139	195	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	141	195	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	143	179	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MSEVAKDPAI KLFGKTIPVP EIPTGSGDLT GAPELSSVDD SVDQNNASST NSTSSSDAHE 60 LEEIDNKDTL VNKPDEKKEE VVPLQSSEIV NPDTTSAAGE ESVSPSTEKE AMPLKTSKTE 120 EEQSETSNSQ DKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT 180 MRNVPVGAGR RKNKNSAVHY RQINGPEGAM QNNRKDLPNG VHHPPLMCNG TVLTFGSDAP 240 LCESMASVLN LSEKTAHNYM RNGFAKPEEL RIRVPGAGGE KGDDQSNKSS VSSAKPMGGT 300 TNSNSQEQSI QNGHSFTPQI PYFPGPPWTF PWNPAQWNSS VPPPAFCPPG FAMPFYPATA 360 YWGVSGAWNM PWLAQPSSPN AAATNSGPNS PTLGKHSREE NMFKSNEPGG ENEDKQSKEN 420 HKEKCLWVPK TLRIDDPEEA AKSSIWTTLG IKHDKDDSVL GEGLFKPFPS KYHEKSHPMQ 480 ASPVLQANPA ALSRSLNFRE TS

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MSEVAKDPAI KLFGKTIPVP EIPTGSGDLT GAPELSSVDD SVDQNNASST NSTSSSDAHE  60
LEEIDNKDTL VNKPDEKKEE VVPLQSSEIV NPDTTSAAGE ESVSPSTEKE AMPLKTSKTE  120
EEQSETSNSQ DKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT  180
MRNVPVGAGR RKNKNSAVHY RQINGPEGAM QNNRKDLPNG VHHPPLMCNG TVLTFGSDAP  240
LCESMASVLN LSEKTAHNYM RNGFAKPEEL RIRVPGAGGE KGDDQSNKSS VSSAKPMGGT  300
TNSNSQEQSI QNGHSFTPQI PYFPGPPWTF PWNPAQWNSS VPPPAFCPPG FAMPFYPATA  360
YWGVSGAWNM PWLAQPSSPN AAATNSGPNS PTLGKHSREE NMFKSNEPGG ENEDKQSKEN  420
HKEKCLWVPK TLRIDDPEEA AKSSIWTTLG IKHDKDDSVL GEGLFKPFPS KYHEKSHPMQ  480
ASPVLQANPA ALSRSLNFRE TS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.1P1MT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM451633	4e-62	AM451633.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X095025.7, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016194291.1	0.0	cyclic dof factor 2
TrEMBL	A0A151TC81	0.0	A0A151TC81_CAJCA; Dof zinc finger protein DOF5.2
STRING	XP_007139523.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-107	cycling DOF factor 2