PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.18QQE
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 353aa    MW: 40198.4 Da    PI: 4.4562
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.18QQEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.9e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+      G  +W+++++  g+ R++k+c++rw +yl
      Araip.18QQE 14 KGPWTAEEDKKLISFLLTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.45.2e-1673111747
                      HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
      Araip.18QQE  73 YEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                      599*************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-19562IPR009057Homeodomain-like
PROSITE profilePS5129413.23961IPR017930Myb domain
SuperFamilySSF466896.74E-2611108IPR009057Homeodomain-like
SMARTSM007175.6E-121363IPR001005SANT/Myb domain
PfamPF002496.3E-141461IPR001005SANT/Myb domain
CDDcd001672.50E-81661No hitNo description
PROSITE profilePS5129425.21562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2463117IPR009057Homeodomain-like
SMARTSM007179.9E-1466114IPR001005SANT/Myb domain
PfamPF002491.2E-1373111IPR001005SANT/Myb domain
CDDcd001679.36E-1174112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDKKLISFLL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDYEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPVTHKPLS NNQQIQEQSN QTPPHNVDFD PNHDELPKTQ DQNNPKEEEK PDTTTESKER  180
EEKMVMMMPP PLIDDTIIMD DEIIIMNDIN GFCTDEVPII EPHEILVPSS DPSPSSSSSS  240
SSSSSSSSSF SSSNNFLEDL QLPDFEWCCN NDHNDIIIND DNNVASWNDD DFINCLNSLI  300
NDDNDDHDHD HDNGESSKQQ QLVFDDNAPS SPLSQYSNMV MDYSESSWPY GFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.18QQE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958311e-118BT095831.1 Soybean clone JCVI-FLGm-19P8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016167224.10.0protein ODORANT1
RefseqXP_025668250.10.0transcription factor MYB20
SwissprotQ9C7U77e-94MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A444YCI20.0A0A444YCI2_ARAHY; Uncharacterized protein
STRINGXP_007141914.11e-121(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-89myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]