PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.17KGH | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 722aa MW: 78811.4 Da PI: 5.9066 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Araip.17KGH 24 RERWTEEEHNRFLEALKLHGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.05E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.226 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 9.2E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-8 | 23 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MDAYSSGEEV VIKTRKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFT KLEKEAQAKG VPIGQALDIE IPPPRPKRKP SNPYPRKTSA GVASLHSGAK 120 DGKLSSLESS HAKQALDLEK EPVPEKHNGD KVSHVKENKD ENCSKVFTLL QELPCSSVSS 180 ANKSSISWSV PLQNSCGLRE IIPSVKEVIA KDGTNKSFVT IELENRKLEI DDGKQTNGNS 240 SLENSDTVKL VQNEKTDGLN CELTIDGIQG NQNYPRHVTV HVVDGKLRTS TANPSQDMVF 300 QDSMFQPLGG INGQPNLFTN STVSNTSESQ NNTERSSVHQ SFLPYPPFIQ NNQGDYQSFL 360 QMSSTFSSLV VSTLLQNPAA HAAASFAATF WPCANSEASA DSPTCSQGGF PPRQNGSPPS 420 VAAIAAATVA AATAWWAAHG LLPMCAPLHT AFACPPTSMP ADQTLDPVCS EAQQAQQSPS 480 KSPVDISSDS EESGDAKLHA SPSKATDQEL NKEISEHIDS NKAKGRKPVD RSSCGSNTTS 540 SSELETDALE KDEQGKEEPE TADANNLAID SSNRRSRSVS NLTDSWKEVS EEGRLAFRAL 600 FAREVLPQSF SPPPDLLNKD QEMDSIKDNK QTTDIKDEGQ DSKKCSSIFE GIQKMMPCIE 660 NNEEEGLLTI GLGQGKLKTR RTGFKPYKRC SMEAKENRVG STGNQGEEQG SKRIRLEGEA 720 ST |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.17KGH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016182525.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_016182545.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_016182548.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_016182549.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_016182550.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_016182551.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_016182552.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_016182554.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_016182560.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_020970964.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_025631854.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_025631855.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_025631856.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_025631857.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_025631858.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_025631859.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_025631860.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_025631862.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_025631863.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_025631864.1 | 0.0 | protein LHY isoform X1 | ||||
TrEMBL | A0A445ACY9 | 0.0 | A0A445ACY9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA07G05410.6 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4860 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 2e-79 | circadian clock associated 1 |