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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.13D8C | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 335aa MW: 37457.8 Da PI: 4.7495 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.5e-12 | 152 | 197 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ +++ L l+P + kK++Ka++L A++Y+k+Lq Araip.13D8C 152 HIMAERKRREKLSQSLIALAALIPGL-----KKMDKASVLGDAIKYVKELQ 197 999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.135 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-15 | 151 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-9 | 152 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.22E-11 | 152 | 201 | No hit | No description |
SuperFamily | SSF47459 | 5.23E-16 | 152 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-13 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEELNASATN WLSDLDIDDY ELFSECNLKK FLDEDEENQF DEMVMSAVLG EEEEEEEERP 60 TKQLRTCSSS SITNYVSSNS SSSSSPTSQI LSFENSYNPS SQFYGFEFDA TPNDKVSPQP 120 QVGNNNDKNK VEQTRKPQSQ GSKRHAAHSH DHIMAERKRR EKLSQSLIAL AALIPGLKKM 180 DKASVLGDAI KYVKELQGRL KVLEEENKRE VESVVIVKNP RFITSSSDDD SSSCDDDTLE 240 ADGEAAVAHV EARVAAAEKE VLLRIHCKKQ KGIYVKLLSE IQSLHLYVVH SSVLPFGDSV 300 LDITIVAQMG TEYKLSIRDL VRNLRVATLK TMSSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 160 | ERKRRE |
2 | 156 | 161 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.13D8C |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016201562.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | A0A444ZAU8 | 0.0 | A0A444ZAU8_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA17G16720.1 | 4e-92 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11069 | 12 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 6e-37 | bHLH family protein |