PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.12NAS

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NF-YC

Protein Properties

Length: 301aa MW: 34276.7 Da PI: 7.1301

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.12NAS	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	164.2	1.8e-51	119	220	2	100
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 l++fw +q ie+a+df+ h+lPlarikki+kade+vkmisaeaP+++skace+fi+elt+r+w++aeenkrrtl+k+diaaavt+td+fdflvd+v Araip.12NAS 119 LHNFWDNQyreIEQAADFRIHSLPLARIKKIMKADENVKMISAEAPIIFSKACEMFIMELTMRAWNNAEENKRRTLQKNDIAAAVTKTDVFDFLVDVV 216 899**99999********************************************************************************** PP NF-YC 97 prde 100 prde Araip.12NAS 217 PRDE 220 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.14E-31	105	212	IPR009072	Histone-fold
Pfam	PF00808	7.6E-21	140	203	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.3E-37	141	218	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MEIPTQQLTN ATLACFNAYI SSCNKPLKAR ATSSYKNIIM RYKHHSYISS SVFPLSTELK 60 SLIVVESDQS ATRGTSTPSH TKVVAGPSVP SPLLRDHQHS HHYIHYHHLQ QEEEFHQKLH 120 NFWDNQYREI EQAADFRIHS LPLARIKKIM KADENVKMIS AEAPIIFSKA CEMFIMELTM 180 RAWNNAEENK RRTLQKNDIA AAVTKTDVFD FLVDVVPRDE TVDLGLYAGI RRGGANNNIV 240 PCYYYVPPQH VMGPPPYGPP RVPMVGRHVP NQDNIDEQQN SENTTHAMCP KEQNHSSDSD 300 E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-49	126	218	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	196	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.12NAS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016197421.1	1e-180	nuclear transcription factor Y subunit C-2-like
Refseq	XP_020976230.1	1e-180	nuclear transcription factor Y subunit C-2-like
Refseq	XP_025645838.1	1e-180	nuclear transcription factor Y subunit C-2
Swissprot	Q9ZVL3	7e-56	NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBL	A0A444ZCK5	0.0	A0A444ZCK5_ARAHY; Uncharacterized protein
STRING	XP_010094005.1	1e-61	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1257	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	9e-57	nuclear factor Y, subunit C2

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714]