PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.0VK1P | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NF-YA | ||||||||
Protein Properties | Length: 103aa MW: 11694.8 Da PI: 10.8358 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 52.5 | 1.6e-16 | 51 | 84 | 1 | 34 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeks 34 d+p+Y+NaKQy++Il+RRq+Rak+e+++kl +++ Araip.0VK1P 51 DNPIYINAKQYHGILRRRQSRAKIEAQNKLIKNC 84 68***************************95544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.0E-7 | 49 | 100 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 15.995 | 50 | 103 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.7E-11 | 53 | 84 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MKPFLLLNHP NPVFNCEQVN STHSMGQPQM LPQVLGLRSS RIALPLDLAK DNPIYINAKQ 60 YHGILRRRQS RAKIEAQNKL IKNCKVCSIS KDVATRTSQR LVC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.0VK1P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC355790 | 8e-72 | KC355790.1 Arachis hypogaea clone Contig9308 nuclear transcription factor Y subunit A-3 (NF-YA3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016202628.1 | 1e-43 | nuclear transcription factor Y subunit A-3 | ||||
Refseq | XP_025630903.1 | 1e-43 | nuclear transcription factor Y subunit A-3 | ||||
Swissprot | Q9SYH4 | 2e-15 | NFYA5_ARATH; Nuclear transcription factor Y subunit A-5 | ||||
TrEMBL | A0A444Z2P1 | 2e-56 | A0A444Z2P1_ARAHY; Uncharacterized protein | ||||
STRING | XP_004513462.1 | 8e-35 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 8e-18 | nuclear factor Y, subunit A5 |