PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.0TX1W
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 289aa    MW: 33271.5 Da    PI: 4.9965
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.0TX1WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.5e-1780132456
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  + ++ ++q+e Le+ Fe ++++  e++ +LAk++gL  rqV +WFqNrRa+ k
  Araip.0TX1W  80 KKRLRSDQVEFLEKSFEVDNKLEPERKFQLAKQIGLHPRQVAIWFQNRRARFK 132
                  456889*********************************************98 PP
2HD-ZIP_I/II117.57.6e-3879170293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kk+rl ++qv++LE+sFe ++kLeperK +la+++gl+prqva+WFqnrRAR+ktk++Ekd++aLk+++d+l+++ + L +++ +L++++++
  Araip.0TX1W  79 KKKRLRSDQVEFLEKSFEVDNKLEPERKFQLAKQIGLHPRQVAIWFQNRRARFKTKRIEKDFAALKQSFDTLQQQYDLLLRDNLNLQQQVDS 170
                  9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.22E-1867134IPR009057Homeodomain-like
PROSITE profilePS5007116.82774134IPR001356Homeobox domain
SMARTSM003891.9E-1576138IPR001356Homeobox domain
CDDcd000865.35E-1579135No hitNo description
PfamPF000466.3E-1579132IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1785133IPR009057Homeodomain-like
PRINTSPR000313.8E-5105114IPR000047Helix-turn-helix motif
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
PRINTSPR000313.8E-5114130IPR000047Helix-turn-helix motif
PfamPF021831.3E-10134174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEEAINQLYA PHLRQHNQTL FHPSQPSFQG SKSVVNFESV SVSGSEIRNG PLLLEDNTFG  60
ADDEDYDCCL QQQGSSSYKK KRLRSDQVEF LEKSFEVDNK LEPERKFQLA KQIGLHPRQV  120
AIWFQNRRAR FKTKRIEKDF AALKQSFDTL QQQYDLLLRD NLNLQQQVDS LKKRVIPREE  180
EGLDDGVNSK HIIEEVGVNM ISKVEDATTT NSSKSDVLDS DSPNYTDGNH SSSPHHDFSS  240
HHQQHNNNNN LLKTLSFLPK IEDDDDHDNT CNFGLPVVDE DQAFDFWSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.0TX1W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016190985.10.0homeobox-leucine zipper protein HAT5
RefseqXP_025638984.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A445DP470.0A0A445DP47_ARAHY; Uncharacterized protein
STRINGAES965364e-76(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3053122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-32homeobox 1