PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.0S3JI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 40301.8 Da PI: 6.8812 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 116.6 | 2.4e-36 | 50 | 192 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgy 82 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ + + Araip.0S3JI 50 LPAGVKFDPTDQELI-EHLEAKVESKNMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqnecdlqGGETR 145 799************.99*********5553344444434666646**********.555666799******************84555554433778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Araip.0S3JI 146 WHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 192 ************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.19E-38 | 45 | 211 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.01 | 50 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-16 | 51 | 192 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MNNNKISNLS SVSSSDLIDA KLEEHQWCGG SKQCPGCGHK FESKPDWLGL PAGVKFDPTD 60 QELIEHLEAK VESKNMKSHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG LSKHFFHRPS 120 KAYTTGTRKR RKIQNECDLQ GGETRWHKTG KTRPVMVNGK QKGCKKILVL YTNFGKNRKP 180 EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWS SDRSATTTIA TAEGSGEPLQ 240 NSRRDSGSGS CSSKEINIGH RDEMSAVVGV NNTPITSFTH PLDIHHHLKS DHFSFIPFRK 300 NFDEVGIGEA STAREVQASG SCDEVVHEHE SSITNTQEAE WLKYSSYWPD PDNPDHHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-13 | 48 | 192 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.0S3JI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025656168.1 | 0.0 | NAC domain-containing protein 75 | ||||
Refseq | XP_025656169.1 | 0.0 | NAC domain-containing protein 75 | ||||
Refseq | XP_025656170.1 | 0.0 | NAC domain-containing protein 75 | ||||
Swissprot | Q9M0F8 | 1e-140 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A444YZJ0 | 0.0 | A0A444YZJ0_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA08G03590.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4520 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-137 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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