PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.0GM4I

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bZIP

Protein Properties

Length: 331aa MW: 35985.9 Da PI: 6.356

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.0GM4I	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	137	192	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ l Araip.0GM4I 137 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTNGLS 192 9*****************************************99988877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.8E-16	133	197	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.818	135	198	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.2E-10	137	188	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.4E-10	137	191	No hit	No description
Pfam	PF00170	5.1E-9	137	194	IPR004827	Basic-leucine zipper domain
CDD	cd14703	6.99E-24	138	187	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
TAATSSASSL FVRSAANGHR RAHSEVSFRL PDDMMDLSPS DPFTGGSSTA SLDEIGSEDD 60 LFTTYIDVDK LGNGSGGSGN GSDPIGNGTE SEKAVPRPRH RHSNSVDGST TSFGEIMDAK 120 KAMPPDKLAE LWTIDPKRAK RILANRQSAA RSKERKARYI QELERKVQTL QTEATTLSAQ 180 LTLYQRDTNG LSTENTELKL RLQAMEQQAQ LRDALNEALK KEVERLKVAT GEMMSPTESF 240 NLGMHQMPFT GANFFPIQPQ SGPSDHQNMQ LPPFAHAPSG MPTHQLQQSS SHPLSEIMQN 300 HMQGLDINSK GPTTVKSEGP SISASESSTT F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.0GM4I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016167043.1	0.0	transcription factor RF2b
Refseq	XP_025666847.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-102	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A444YC13	0.0	A0A444YC13_ARAHY; Uncharacterized protein
STRING	GLYMA14G38460.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-89	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]