PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.04CKL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 219aa MW: 25539.3 Da PI: 5.0063 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41 | 3.3e-13 | 62 | 155 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvf 97 ffkv+ ++s l lp ++++ +k++ + + +l++ +g W+vk + ++++ + +GWkeFv++ng++ + ++vF dg+s+f +k+f Araip.04CKL 62 FFKVF--LPQFSSEKLLLPEEHVALTRMKERVPEEFILRNGRGGAWRVKT--SCIGEKVCFDDGWKEFVSDNGIQeACVIIVFNPDGSSTF--EFKIF 153 88999..77899999********88899999999****************..7788889****************4456679998887888..88888 PP -S CS B3 98 rk 99 +k Araip.04CKL 154 EK 155 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-17 | 55 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-15 | 57 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.434 | 60 | 156 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.39E-8 | 61 | 153 | No hit | No description |
SMART | SM01019 | 6.6E-8 | 62 | 156 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-11 | 62 | 155 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
FKFLFFAKPH LILLFFLSSF ASSTLKESTF VQIWTIFFSR QIKNFDIHFF DMMNTSAEQS 60 SFFKVFLPQF SSEKLLLPEE HVALTRMKER VPEEFILRNG RGGAWRVKTS CIGEKVCFDD 120 GWKEFVSDNG IQEACVIIVF NPDGSSTFEF KIFEKSMCEK TQTLEEEAAV EMEEHVLYLV 180 LGGNYNDIKE YGEIIATYID QHNPYFVAKM NKSRPNELF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.04CKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025642221.1 | 1e-122 | B3 domain-containing protein REM20 | ||||
TrEMBL | A0A445A8V7 | 1e-120 | A0A445A8V7_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12852 | 11 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06160.2 | 5e-12 | B3 family protein |