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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.03YVC | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 27127.8 Da PI: 7.3443 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.5 | 2.3e-08 | 38 | 85 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n ++ R+++ + ++ Lr+llP ++ ++K s ++ +Av+YIk++q Araip.03YVC 38 NDSDKILRKEMATLYSSLRSLLPLQF--IKGKRSISDHMNEAVNYIKYMQ 85 5667889*****************65..********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.794 | 32 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-5 | 38 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.85E-8 | 38 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.14E-5 | 38 | 89 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-6 | 45 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MFPLQRGNEL VIQFSNSSHQ HKISQDLILE DYASLDVNDS DKILRKEMAT LYSSLRSLLP 60 LQFIKGKRSI SDHMNEAVNY IKYMQNNIKE LGAKRDELKK KKNLSNYYHH HDNNDKPTSS 120 TNRYFTLHES DSGVLGIEIT GGAAAAGEEE GVTLSEILGL LVEEEGLEVI GYLSSKVNGR 180 LVHSVQCEVV NSNSVDLFEL RRKLAKEIKV VRILKKNFGD TYMEMRNFIS FSNHYNVK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.03YVC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016204160.1 | 1e-124 | transcription factor bHLH118 | ||||
Refseq | XP_025656692.1 | 1e-124 | transcription factor bHLH118 | ||||
TrEMBL | A0A445CZM0 | 1e-116 | A0A445CZM0_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G27630.6 | 3e-74 | (Glycine max) | ||||
STRING | GLYMA16G32620.1 | 1e-74 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25400.1 | 6e-23 | bHLH family protein |