PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.03FDB
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 624aa    MW: 70696.8 Da    PI: 5.7572
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.03FDBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.9e-12370413755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   +Er+RR+++N+++ +Lr+l+P  +      Kl+ a+iL  A+e++k+Lq
  Araip.03FDB 370 VAERKRRKKLNDRLYNLRSLVPRiS------KLDRASILGDAIEFVKDLQ 413
                  68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.97E-13362417No hitNo description
PROSITE profilePS5088815.294363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16366427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-15369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9370413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-16370428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.76E-4510573No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MDLSFCFSCF LFVCYSISLL LVLVKGIISS ILKHFAFGSS KKDFYYHLLP SGDKNMNMMM  60
MQNLTERLRP LVGLNGWDYC VYWKLSEDQR FVEWLGCCCG GTDQNNNVGE DIHIFPCRDT  120
MFSHPRTNHC YLLSQLPTSI SMIDSGYETI GTQVLIPVPG GLVELFVTKQ VPEDHQVIDF  180
VTAQCIVLVE QEAANNSTSF NMQSNVVGDD NNNNNNNNNN NNENQVMMNN NNNNNQFVLT  240
TAPETSPHDE IPITLCSSPL NFMQQFRTMN KNNDNNGVAA AFSEEYQGSI FLHENQNNNN  300
QPMKAAAMEE EEEEEQQVGT KENNNNKNEG GVVGVGRSDS MSDCSDQNEE EEDGKYRRRN  360
GKGNQSKNLV AERKRRKKLN DRLYNLRSLV PRISKLDRAS ILGDAIEFVK DLQKQVKDLQ  420
DELEDNNNNS DTTAVDHHDS SNQFLDHFGA SYVIPNHKHM QQEAVDATTL TMDKQHSQQM  480
EVLARHTKVK INIVQPQVEV AVIDGKEYFV KVFCEHRAGG FVKLMEALNT LGMDVVHATV  540
TSHKGLVSNV FKVEKKDSDM VEAEDVRDSL LELTRNPSCR VWSNNNTKNN NPTSENSNGV  600
GVGRDHHHHH HHHMPAYHPH PFHT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356377RRRNGKGNQSKNLVAERKRRKK
2371378ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.03FDB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025674351.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A444XUI70.0A0A444XUI7_ARAHY; Uncharacterized protein
STRINGGLYMA10G42830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-56bHLH family protein