PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.0158U
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 342aa    MW: 38446.9 Da    PI: 6.4063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.0158UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.8e-10239280955
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Araip.0158U 239 AKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 280
                  69*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.68E-14228289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12229288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-10232284No hitNo description
SMARTSM003531.0E-11236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-7240280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MALAKDQILH DSSMGSKVQS CVFNENNEYH KSVLEEEDGS QSTNGFSNDS AITHSPPLCA  60
NAYAYKATNY QLEEEQQSLI DFKGSCYNTL TQVVSESLLN FEQNRMVPGN SYMKDDTNVW  120
DNNLHHQWSQ ISPRSTSELR PVQDSSCFQS SSSSYSTIVN SAKEKQLHGE SSSYGWLYSQ  180
QTIPAHSIQD PAAQEPISKK RISMQAEKMK AAKKQCTDES KMPKSNKSGA SKDPQSVAAK  240
NRRERISERL KILQELVPNG SKVDLVTMLE KAISYVKFLQ LQVKVLAADE FWPVQGGKAP  300
DISQVKEAID AILSSQRSEE QVQQPQSRSS WIFYEYYSVI IK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.0158U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311232e-87KT031123.1 Glycine max clone HN_CCL_81 bHLH transcription factor (Glyma14g07590.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193606.10.0putative transcription factor bHLH086
RefseqXP_025638512.10.0putative transcription factor bHLH086
TrEMBLA0A444ZVY50.0A0A444ZVY5_ARAHY; Uncharacterized protein
STRINGGLYMA18G04420.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.12e-54RHD SIX-LIKE 1