PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9992s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 418aa    MW: 46687 Da    PI: 4.5768
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9992s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001250270121
                          EEETTTTEEESSHHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                          +kC+ Cgk F++   L  H  
  Araha.9992s0008.1.p 250 FKCSVCGKEFPSYQALGGHKA 270
                          89*********9988877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.2E-8249320No hitNo description
PfamPF139125.5E-12250273IPR007087Zinc finger, C2H2
SMARTSM003550.033250272IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.99250277IPR007087Zinc finger, C2H2
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
PfamPF139121.0E-10298322IPR007087Zinc finger, C2H2
SMARTSM003550.45298320IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328298320IPR007087Zinc finger, C2H2
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MALTTQLEQL LTKANQRLKV IEPIGLEEEG EEDDECVEIG LESCEQQSIP ERFGDSKDPS  60
SDQRVLESIR REEDDAVLIE PWLKSRELSQ RQGFGDDEDS FAEHSFLQVE ECFGDDEDSF  120
SESNRQEEEE EEKEEARFSN DDVFLELLLD GIERSKRKQN RSSSSSHDDD DDDSSSTHTG  180
LESIRQEEEN RAVIRPWLVS VAPNQQRFGD DEVPSSSSLS EDETAAICHK RQSQTHTQPQ  240
PQMLPKSDPF KCSVCGKEFP SYQALGGHKA GHRVKPPVEN ATGEKTRPKR LAPSGKIHKC  300
SICHRLFPTG QSLGGHKRLH YEGVLSGHKR SQDKEAGSQG DKSSPSGNGS VVTHVSDPKQ  360
SLKGLIDINT VPSPEFNEPG DKDIVEVESA LLANKLQQER GITNTNRING FHFFNFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9992s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0741100.0AC074110.5 Arabidopsis thaliana chromosome 1 BAC T18C15 genomic sequence, complete sequence.
GenBankAC0796740.0AC079674.4 Arabidopsis thaliana chromosome 1 BAC F10F5 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866197.10.0uncharacterized protein LOC9327603
TrEMBLD7KFT30.0D7KFT3_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10031830.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.26e-31zinc-finger protein 2