PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9992s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 400aa    MW: 44373.3 Da    PI: 6.3809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9992s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012188210123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cgk F++   L  H  +H
  Araha.9992s0007.1.p 188 FECSVCGKGFPSYQALGGHKASH 210
                          89**********99999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.6E-8187210No hitNo description
SMARTSM003550.024188210IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.843188215IPR007087Zinc finger, C2H2
PfamPF139124.1E-13188211IPR007087Zinc finger, C2H2
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SuperFamilySSF576672.6E-8237264No hitNo description
SMARTSM003550.12242264IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-12242266IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDLKTLNQFS PMTKLTVPKH KFMQLRRDEL RCYERSKRNF SLHDDEDPSS KRRRLEYLRE  60
KEDDVVFIEP PRLNSSELSI RQRSTSDEAP SQTVKHKISD DDEFANDAVF YKPWLDNLRL  120
KRQRLGDDED PSSNSSSPSE DDIAALTLIQ FSCDKRQTQT QSQPQQQPRS QSQTQTTQPQ  180
TPPKFDLFEC SVCGKGFPSY QALGGHKASH RVKQPQPLME NAGADAGEKT RSKMLSPSGK  240
IHKCDICHVV FPTGQALGGH KRRHYEGVLG GHKHGNDEVV LKLSPNNNGS VVTKVLDPGQ  300
SLMVSDNALS GHNVLDLKLS LSESDGVLVS DKGSQDQVVR EEDKCSPSSN GSVVTNVSDP  360
EQSLRRLIDL NNPPSPEFDA SGGGDVEEVE SAMILANKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15054KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9992s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0741101e-112AC074110.5 Arabidopsis thaliana chromosome 1 BAC T18C15 genomic sequence, complete sequence.
GenBankAC0796741e-112AC079674.4 Arabidopsis thaliana chromosome 1 BAC F10F5 genomic sequence, complete sequence.
GenBankCP0026841e-112CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866197.10.0uncharacterized protein LOC9327603
TrEMBLD7KFT30.0D7KFT3_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10031830.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-26zinc-finger protein 2