PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.9182s0005.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 233aa MW: 25383 Da PI: 9.2315

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.9182s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.9e-09	79	123	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L Araha.9182s0005.1.p 79 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 123 99*********************55......9************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.37E-15	72	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.802	74	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-14	76	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	79	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-10	80	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MFPLGLSLDQ GKGPGFLRPE GGHGSGKRFS DDVVDNRCSS MKPVFHGQPM QQPAPSAPHQ 60 PTSIRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL VPTVNKTDRA AMIDEIVDYV 120 KFLRLQVKVL SMSRLGGAGA VAPLVTDMPL SSSVEDETGD GGRTPQPAWE KWSNDGTERQ 180 VAKLMEENVG AAMQLLQSKA LCMMPISLAM AIYHSQPPDT SSVVKPETNP PQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	88	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.9182s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF367328	0.0	AF367328.1 Arabidopsis thaliana AT4g02590/T10P11_13 mRNA, complete cds.
GenBank	AK316748	0.0	AK316748.1 Arabidopsis thaliana AT4G02590 mRNA, complete cds, clone: RAFL07-83-K16.
GenBank	AY143951	0.0	AY143951.1 Arabidopsis thaliana At4g02590/T10P11_13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020878315.1	1e-170	transcription factor UNE12
Swissprot	O22768	1e-169	UNE12_ARATH; Transcription factor UNE12
TrEMBL	D7M3G2	1e-169	D7M3G2_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.6__3435__AT4G02590.2	1e-169	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	1e-156	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.9182s0005.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]