PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.8237s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 311aa MW: 35179.3 Da PI: 6.2363 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.4 | 5.2e-31 | 94 | 148 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrW+++LH++Fv+ave+LGG++kAtPk+++e+m+v+g++l+hvkSHLQk+Rl Araha.8237s0003.1.p 94 KARLRWSSDLHDCFVNAVEKLGGPDKATPKSVKETMDVEGIALHHVKSHLQKFRL 148 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-27 | 91 | 148 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.74E-13 | 93 | 148 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-26 | 94 | 149 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MKKKEKGKEI VTFEENPSTY VHHLDHFDHT KKVSMLLSEQ EIEVILQKST SNKETYKENL 60 QKSKKDNAEK VGIEEGNGSS SKITPCIFYT SDEKARLRWS SDLHDCFVNA VEKLGGPDKA 120 TPKSVKETMD VEGIALHHVK SHLQKFRLGK CNIRDGTNQY IRRFVNPYMS IESQSMHGLS 180 SITTQQQQND SCIIHDSYRN ATFSSAMVPP TINSLHQDTL NNTILFTTTP QSIQASVPHN 240 QYPPYNTLEV VKAQLSALQD SSTNQTQETL FRGTNLSSSV TRDEVDPVDT YIDWDKVNER 300 DIELDPVEIL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-17 | 94 | 150 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-17 | 94 | 150 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-17 | 94 | 150 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-17 | 94 | 150 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-17 | 94 | 150 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-17 | 94 | 150 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-17 | 94 | 150 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-17 | 94 | 150 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.8237s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886266.1 | 1e-175 | transcription repressor KAN1 | ||||
TrEMBL | D7L9C8 | 0.0 | D7L9C8_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_3002359 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13406 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G06020.1 | 1e-163 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.8237s0003.1.p |