PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8175s0021.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 300aa    MW: 34616.7 Da    PI: 9.1367
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8175s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.75.6e-221662349
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +n+sn qvtfskRr g++KKA+EL++LC+ae+a+++fs+  k++ +
  Araha.8175s0021.1.p 16 MKNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIVVFSPGRKVFSF 62
                         589*************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.207666IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-31665IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-27783IPR002100Transcription factor, MADS-box
CDDcd002651.34E-34778No hitNo description
PRINTSPR004041.7E-18828IPR002100Transcription factor, MADS-box
PfamPF003194.0E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEIAI VVFSPGRKVF  60
SFGHPNVESV IDRFLNNNPP LPHQHNNMQL SETRRNSIVQ DLNNHLTQVL SQLESEKKKY  120
DELKKIREKT RALGNWWEDP VEELTLPQLD GFKGNLENLK KVVTVEASKF FQATVPNFYV  180
GSSSNAAFGI DGGSHINHDL DLFSQRRMMD INAFNYNQNQ VHPNPALPFG NNAYGHINEG  240
FVPDYNMNYR PEYIQNQYQN QNQSQNQNQN QNLSFKRENI SEYEHHHHGY PPHSRSDYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A5e-14795290MEF2 CHIMERA
6bz1_B5e-14795290MEF2 CHIMERA
6bz1_C5e-14795290MEF2 CHIMERA
6bz1_D5e-14795290MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8175s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4930930.0EU493093.1 Arabidopsis thaliana MADS-box protein AGL62 (AGL62) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864686.10.0agamous-like MADS-box protein AGL62
SwissprotQ9FKK20.0AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLD7MTU50.0D7MTU5_ARALL; MADS-box protein
STRINGfgenesh1_pg.C_scaffold_80020410.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-162AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]