PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.8074s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 252aa MW: 28289.5 Da PI: 7.1256 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.7 | 4.3e-13 | 20 | 97 | 15 | 96 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 lp +f++++g++k++ ++ + ++g++ +v l + ++ r+ l++GW++F+ ng + g++++++l++r+++ +++++ Araha.8074s0001.1.p 20 FQGLPLPFMRANGLNKPG--EIGMLAKDGKKLTVSLLKDVNG-RMSLGRGWRDFALVNGFQIGESITLELIWRDST-PMFRF 97 3479***********777..7***************766665.578**************************6444.67765 PP | |||||||
2 | B3 | 46.9 | 5.1e-15 | 158 | 248 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 l ++ k ++l+lp +f++++g++ +++t+t+ + + +W + + ++g++ + GW +F+kang+k+g ++++++++ ++++v Araha.8074s0001.1.p 158 L-KPKDVKDCNLILPSEFMRAYGID--KHMTITILGKANMKWWGYP--SSRDGTIAVGIGWANFCKANGIKTGNLFTLEFISEeVDTSPV 242 4.445556778************99..688************9999..899999***************************8889***** PP EEEE-S CS B3 94 vkvfrk 99 ++++ + Araha.8074s0001.1.p 243 FRICPN 248 ***976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.1E-12 | 5 | 101 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.53 | 6 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.58E-15 | 12 | 97 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.3E-13 | 12 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.0E-14 | 13 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.1E-12 | 20 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-15 | 148 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-16 | 151 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.503 | 153 | 249 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-15 | 153 | 249 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.68E-10 | 157 | 247 | No hit | No description |
Pfam | PF02362 | 9.3E-14 | 157 | 248 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
LLVSFINIMC YKYNLHLKNF QGLPLPFMRA NGLNKPGEIG MLAKDGKKLT VSLLKDVNGR 60 MSLGRGWRDF ALVNGFQIGE SITLELIWRD STPMFRFSST CTDSECDQRQ GEYCSQACEE 120 EPICIEPSGN RDKKEKNNIE DKEYSSLETL NRVLTLTLKP KDVKDCNLIL PSEFMRAYGI 180 DKHMTITILG KANMKWWGYP SSRDGTIAVG IGWANFCKAN GIKTGNLFTL EFISEEVDTS 240 PVFRICPNSG D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.8074s0001.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024014113.1 | 6e-67 | B3 domain-containing protein REM12-like | ||||
TrEMBL | D7LIB6 | 1e-161 | D7LIB6_ARALL; Uncharacterized protein | ||||
STRING | scaffold_400526.1 | 1e-162 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14267 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24680.1 | 4e-62 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.8074s0001.1.p |