PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.7962s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 25682 Da PI: 7.1977 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.1 | 1.2e-11 | 72 | 116 | 6 | 53 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 rE++RRdr+N++f+eL ++l + +++K +K++i A++ +++ Araha.7962s0002.1.p 72 AFREKQRRDRLNDKFSELSSILEPG---RAPKTDKVAIINDAIRMVNQ 116 569*********************9...9**************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.557 | 66 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-12 | 70 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-7 | 72 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-11 | 72 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-9 | 72 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.90E-8 | 74 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MVSPENTNWL SDYPLIDGAF SDQNPSFPWQ IDASATVSVE VDGFLCDSDV IKESGSRKRI 60 KTESCTGSSS KAFREKQRRD RLNDKFSELS SILEPGRAPK TDKVAIINDA IRMVNQARDE 120 AQKLKDLNSN LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPQPCFLP 180 NPPTLSQAQA PGSKLVPFTT YPGFAMWQFM PPAAVDTSQD HVLRPPVA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.7962s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488632 | 0.0 | AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AY085619 | 0.0 | AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence. | |||
GenBank | BT002433 | 0.0 | BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds. | |||
GenBank | BT006273 | 0.0 | BT006273.1 Arabidopsis thaliana At1g51070 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020869711.1 | 1e-157 | transcription factor bHLH115 | ||||
Swissprot | Q9C682 | 1e-156 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | D7KGW7 | 1e-155 | D7KGW7_ARALL; Basic helix-loop-helix family protein | ||||
STRING | fgenesh2_kg.1__4178__AT1G51070.1 | 1e-156 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1437 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 1e-146 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.7962s0002.1.p |
Publications ? help Back to Top | |||
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