PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7283s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 612aa    MW: 70020.7 Da    PI: 5.4985
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7283s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS406.23.2e-1242255991374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsP 89 
                          l++lL++cA+av+s d+++a+  L++++ ++s++gd +qRla+yf+eAL+ar+++  ++ ++  +p+s+ts   +++ l+a+klf++++P
  Araha.7283s0010.1.p 225 LRSLLTQCAQAVASFDQRRATDKLKEIRSHSSSNGDGTQRLAFYFAEALEARITGnISPPVSTPFPSSTTS---MVDILKAYKLFVHTCP 311
                          6899***************************************************6666777666777776...**************** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                          i+   +++aN+ I+e + +++++Hi+Df++ +G+QWp+Ll+aL++R++gpp+lR+Tg++ p++g   ++++eetg+rL++f+++++vpfe
  Araha.7283s0010.1.p 312 IYVTDYFAANKSIYELAMKATKLHIVDFGVLYGFQWPCLLRALSKRTGGPPMLRVTGIELPQAGfrPSDRVEETGRRLKRFCDQFNVPFE 401
                          ***************************************************************9************************** PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          fn+ +ak++e+++l+eL ++p+E+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++rf eal ++s+l
  Araha.7283s0010.1.p 402 FNF-IAKKWESISLDELMINPEETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHFSSL 490
                          ***.7************************************************************************************* PP

                 GRAS 268 fdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                          fd++++++ +e+  ++r+ +E+ell r++++v++cegaer++r et+++Wr r+ +aGFkp+++s++++k+ak ++rk + + + +++++
  Araha.7283s0010.1.p 491 FDMFDTTIQAEDeyKNRALLEKELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDN 580
                          *******99998899*****************************************************************999******* PP

                 GRAS 356 gslvlgWkdrpLvsvSaWr 374
                          +++++gWk+r ++++S+W+
  Araha.7283s0010.1.p 581 NWMLQGWKGRVIYAFSCWK 599
                          ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.678199579IPR005202Transcription factor GRAS
PfamPF035141.1E-121225599IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MDALLQVSVD GFRFENGSGS CCKPRNNLES GNNLFPNFHE TQNQSSPNDS PPTVCLDNSP  60
VLKYINDMLM DEEDFVGESR DIEALQAAER SFYEILQQQS PESDQNSSSS DQNSGDQDFC  120
FPSTTTSLTD SLVSNGESQR KYRYRNDEED DLENNRRNKQ PAIFVSEMEE LAVKFEHVLL  180
VCKTNQEEEE EKESAITKQS QPNRAGRPKG SSNKSKTQKT NSVDLRSLLT QCAQAVASFD  240
QRRATDKLKE IRSHSSSNGD GTQRLAFYFA EALEARITGN ISPPVSTPFP SSTTSMVDIL  300
KAYKLFVHTC PIYVTDYFAA NKSIYELAMK ATKLHIVDFG VLYGFQWPCL LRALSKRTGG  360
PPMLRVTGIE LPQAGFRPSD RVEETGRRLK RFCDQFNVPF EFNFIAKKWE SISLDELMIN  420
PEETTVVNCI HRLQYTPDET VSLDSPRDTV LKLFRDINPD LFVFAEINGM YNSPFFMTRF  480
REALFHFSSL FDMFDTTIQA EDEYKNRALL EKELLVRDAM SVISCEGAER FARPETYKQW  540
RVRILRAGFK PATISKQIMK EAKEIVRKRY HRDFVIDSDN NWMLQGWKGR VIYAFSCWKP  600
AEKFTNNHVN I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-452086002380Protein SCARECROW
5b3h_A6e-4523160024379Protein SCARECROW
5b3h_D6e-4523160024379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7283s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256040.0AB025604.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15.
GenBankAY0350010.0AY035001.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds.
GenBankAY0629420.0AY062942.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881159.10.0scarecrow-like protein 11
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLD7MSF00.0D7MSF0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__1893__AT5G59450.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]