PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.68360s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 153aa MW: 17981.8 Da PI: 8.4755 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 49.4 | 1.5e-15 | 18 | 130 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 +de ++++yLk + + + +++i ++++++ +P++L + +e+ f + + +++a gk +sg W+ g+dk ++s+ +g Araha.68360s0001.1.p 18 EDEVIISRYLKGMIVNGDSWPDHFIVDANVFNKNPNELF---N-SERP-RFVIVKPRTEACGKTDG--CESGCWRIMGRDKLIKSEeTG 99 68899********98888666588**************6...2.3344.45555556666654444..479*************98778 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + g kk+L f +++p+ k +Wvm+eyrl Araha.68360s0001.1.p 100 KILGFKKILKFCPKSKPREYKRSWVMEEYRL 130 889**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.484 | 9 | 148 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.06E-28 | 18 | 146 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-9 | 18 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MENDAAYDLI KHELLNAEDE VIISRYLKGM IVNGDSWPDH FIVDANVFNK NPNELFNSER 60 PRFVIVKPRT EACGKTDGCE SGCWRIMGRD KLIKSEETGK ILGFKKILKF CPKSKPREYK 120 RSWVMEEYRL TKNLNWKQDH VICKIRLLFE AEI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.68360s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE601751 | 0.0 | HE601751.1 Arabidopsis halleri subsp. halleri BAC clone 9G1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020891528.1 | 1e-106 | uncharacterized protein LOC110231075 | ||||
TrEMBL | I0J3G6 | 1e-106 | I0J3G6_ARAHH; No apical meristem domain-containing protein | ||||
STRING | fgenesh1_pg.C_scaffold_2000441 | 1e-101 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3704 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60340.1 | 6e-99 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.68360s0001.1.p |