PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6729s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 591aa    MW: 67035.7 Da    PI: 5.3777
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6729s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS402.44.4e-1232155851374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          +++lL++cA+av+s d+++a + L++++e++s++gd++qRl  +f+eAL+ar+++   ++   + + ++s++++++ l+a+k f++++P+
  Araha.6729s0005.1.p 215 MRNLLMQCAQAVASFDQRRAAEKLKEIREHSSSHGDATQRLGYHFAEALEARITG---TMTTPI-SATSSRTSMVDILKAYKGFVQACPT 300
                          579****************************************************...333223.333334569**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          l ++++taN++I+e +++++++HiiDf+i +G+QWp+L+qaL++R+ gpp lR+Tg++ p+sg   +e++eetg+rL++f+++++vpfe+
  Araha.6729s0005.1.p 301 LIMCYFTANRTIVELASKATTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGfrPSERVEETGRRLKRFCDKFKVPFEY 390
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ +ak++e+++l++L +++gE+++Vn+vl+l++++de+vsl+s+rd+ Lkl+++++P+++v++  +  +ns+ Fl+rf eal ++s+lf
  Araha.6729s0005.1.p 391 SF-IAKNWENITLDDLVINSGETTVVNCVLRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAAINGTYNSPFFLTRFREALFHCSSLF 479
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d++e++l+++++ r+ vErel+ r++++v+aceg+er++r et+++W+ r+ +aGF+p++l+++++k+ k ++++ + + + ++++++++
  Araha.6729s0005.1.p 480 DMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLNKQIVKDGKEIVKQRYHKDFVIDNDNNWM 569
                          *****************************************************************************888********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          ++gWk+r L++vS+W+
  Araha.6729s0005.1.p 570 FQGWKGRVLYAVSCWK 585
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.944189565IPR005202Transcription factor GRAS
PfamPF035141.5E-120215585IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MDAVLPVPVD GFRFDNGSGS CCKPRNNLES GTTNRFTCFN ESESQSNPSP TESKVCSDYL  60
PVFKYINDML MEEDLEGQSC MLEDSLALQA AERSFYEVLQ DQTPPPSDDQ ISGDLEDGSL  120
GNFSAITSLH QPEVSVESTR RYRHRDDDED DDLEGGRKSK LPAISTVDEL AEKFEEVLLV  180
CQKNDQGEAT EKKTRQGKVS SNRSKQQKSD QPVDMRNLLM QCAQAVASFD QRRAAEKLKE  240
IREHSSSHGD ATQRLGYHFA EALEARITGT MTTPISATSS RTSMVDILKA YKGFVQACPT  300
LIMCYFTANR TIVELASKAT TLHIIDFGIL YGFQWPCLIQ ALSKRDIGPP LLRVTGIELP  360
QSGFRPSERV EETGRRLKRF CDKFKVPFEY SFIAKNWENI TLDDLVINSG ETTVVNCVLR  420
LQYTPDETVS LNSPRDTALK LFRDINPDLF VFAAINGTYN SPFFLTRFRE ALFHCSSLFD  480
MYETTLSEDD NCRTLVEREL IIRDAMSVIA CEGSERFARP ETYKQWQVRI LRAGFRPAKL  540
NKQIVKDGKE IVKQRYHKDF VIDNDNNWMF QGWKGRVLYA VSCWKPAKKQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-432195858375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6729s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2264190.0AK226419.1 Arabidopsis thaliana mRNA for scarecrow-like protein, complete cds, clone: RAFL06-09-N12.
GenBankAL1333140.0AL133314.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12A12.
GenBankAY0874180.0AY087418.1 Arabidopsis thaliana clone 35201 mRNA, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875794.10.0scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLD7LN250.0D7LN25_ARALL; Scarecrow transcription factor family protein
STRINGscaffold_501562.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]