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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.6726s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 356aa MW: 40467.9 Da PI: 7.1052 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.3e-05 | 199 | 218 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Araha.6726s0005.1.p 199 FSCPLCFKTFNRYNNMQMHM 218 89*****************9 PP | |||||||
2 | zf-C2H2 | 13 | 0.00032 | 283 | 305 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ Araha.6726s0005.1.p 283 FACRRCGKAFAVKGDWRTHEKNC 305 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-5 | 199 | 218 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.66 | 199 | 226 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 201 | 221 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.77E-6 | 269 | 303 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 270 | 303 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 283 | 303 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
LMADPACIFK NGYVDYYDYS FNYATSLSRI YNSHDSFYYP HHTTNPNINT NPNFISPDSP 60 PLREALPLLS LSPIHKHQEP IAHHHEYYFM ETTETSSSSN FLDHDLGQSQ KTHDHHHDVA 120 VDLHLGLPNL GDGGSSSSDV VLDSTNFQER HHDHHQDQGV EVTIASDHDG DHGGLQRGNH 180 LHHFWIPTPS QILMGPTQFS CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM 240 LKLPCYCCAP GCKNNIDHPR ARPLKDFRTL QTHYKRKHGV RPFACRRCGK AFAVKGDWRT 300 HEKNCGKLWY CSCGSDFKHK RSLKDHVKAF GNGHVPCCGI DHEEDEAASD VEQQE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.6726s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311811 | 0.0 | AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002885409.1 | 0.0 | zinc finger protein WIP4 | ||||
Swissprot | Q8W030 | 0.0 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | D7KZX7 | 0.0 | D7KZX7_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_3001853 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20880.1 | 0.0 | WIP domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Araha.6726s0005.1.p |
Publications ? help Back to Top | |||
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