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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.6538s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | AP2 | ||||||||
Protein Properties | Length: 247aa MW: 28211.7 Da PI: 9.3158 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 8e-18 | 102 | 151 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ +++g Araha.6538s0010.1.p 102 SHYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYTAARAYDRAAIRFRG 151 79*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.1E-10 | 102 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-15 | 102 | 159 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.6E-29 | 103 | 165 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.766 | 103 | 159 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.55E-23 | 103 | 158 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-16 | 103 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MLDLNHGILS THNEDDDCKV PTSIVNQEED SINPSNDNLS LITFGILKRK EEVEILPPPP 60 PPESVLSGAG NEWLNLSSMQ RNKQEMLVMK KKSRRGPRSR SSHYRGVTFY RRTGRWESHI 120 WDCGKQVYLG GFDTAYTAAR AYDRAAIRFR GLQADINFIV DDYKQDIEKM KNLSKEEFVQ 180 SLRRASASLA RGGSKYKNTH TRNDHIHLFQ NRGWNAAAAK CNEIRKMEGD IKLGAHNKGN 240 EHNDLEL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.6538s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY576276 | 0.0 | AY576276.1 Arabidopsis thaliana AP2 domain transcription factor (SNZ) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002881639.1 | 1e-163 | AP2-like ethylene-responsive transcription factor SNZ | ||||
Swissprot | Q6PV67 | 1e-152 | SNZ_ARATH; AP2-like ethylene-responsive transcription factor SNZ | ||||
TrEMBL | D7LCG4 | 1e-162 | D7LCG4_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_4001673 | 1e-162 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10858 | 18 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39250.1 | 1e-140 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.6538s0010.1.p |
Publications ? help Back to Top | |||
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