PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.64421s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 402aa    MW: 46111.3 Da    PI: 4.9307
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.64421s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-34161072102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl k+ye+++d++ ++++sws++++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+
  Araha.64421s0001.1.p  16 FLAKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQ 95 
                           9**************************************************************99988.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                            +ll++i+r+k 
  Araha.64421s0001.1.p  96 PHLLKNIHRRKP 107
                           *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-6312105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.0E-3813105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDESNHGGSS SSLPPFLAKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK  60
HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLLK NIHRRKPVHS HSLPNLQAQQ  120
NPLTDSERLR MNNQIERLTK EKEGLLEELQ KQDEEREVFE RQVKELKERL QQMEKRQKTM  180
VSFVSQVLEK PGLALNLSPC VPETNERKRR FPRIGFFPDE PMLEENQTCV VVREEGSTSP  240
SSHTTEHQVE QLESSIGIWE NLVSDSCESM LQSRSMMTLD MDESSTCPQS PPLSCIQLSI  300
DTRPKSPPSP RIIDMNSEPD VLKEQNTVAA ATPPPPVAGA NDVFWQQFFS ENPGSTEQRE  360
VQSERKDDKD EAIRSEKCWW SSRNVNTITE QLGHLTSSER S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-221110524129Heat shock factor protein 1
5d5v_B2e-221110524129Heat shock factor protein 1
5d5v_D2e-221110524129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.64421s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1255120.0AY125512.1 Arabidopsis thaliana AT4g18880/F13C5_50 mRNA, complete cds.
GenBankBT0010490.0BT001049.1 Arabidopsis thaliana At4g18880/F13C5_50 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874725.10.0heat stress transcription factor A-4a
RefseqXP_020874726.10.0heat stress transcription factor A-4a
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLD7M9D80.0D7M9D8_ARALL; AT-HSFA4A
STRINGfgenesh2_kg.7__2405__AT4G18880.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.10.0heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]