PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6174s0017.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 392aa    MW: 43773.9 Da    PI: 7.3755
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6174s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.9e-09107131126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt+ C  f++ GtC+ G+ C+FaHg
  Araha.6174s0017.1.p 107 YKTRMCAKFRA-GTCRNGELCNFAHG 131
                          9**********.*************8 PP
2zf-CCCH19.51.7e-061992131125
                          GTS.--TTTTT-SS-S CS
              zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                            G +C+yGdrC+F+H
  Araha.6174s0017.1.p 199 F-GeECPYGDRCNFIH 213
                          5.449*********** PP
3zf-CCCH42.97.8e-14275301127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+lC+ f  tG+C++Gd+C+FaHg+
  Araha.6174s0017.1.p 275 WKTRLCMKFDITGQCPFGDKCHFAHGQ 301
                          8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.9E-15104139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-8105137IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-4106132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793106133IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5107131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6188214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455188216IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036188215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-8190214IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-9270305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-15272304IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-7274301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.253274302IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-11275301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDSSYSDPRP MFVQSPYGGW NQTQMIDSMA NPMNNEQGDL HSLSESQSQS QSQPPQQLQP  60
ALKRPRLVDD NVFNPASSFP QPSSSNPWMV PSLNPPPVNK GTANIFYKTR MCAKFRAGTC  120
RNGELCNFAH GIEDLRQPPS NWQEIVGPPP GQDRERERER ERERERERER PSLAPVANNN  180
WEDDQKIILR MKLCRKFCFG EECPYGDRCN FIHEDLSKFR EDSGKLRESS VISVGTSAAD  240
LPSDTASNHI EVNRQGSIPV PAPMNNGGVV KTVYWKTRLC MKFDITGQCP FGDKCHFAHG  300
QTELHNSVGR ADGEAVNATA SVSKQTVVPA NEAFAMKPTT QVTADSSGLN EEGRRKKCLL  360
KWSDSKKINR IYGDWIDDLP VGQKSSKPVE S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159169RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6174s0017.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0372260.0AY037226.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
GenBankAY0817450.0AY081745.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002883175.10.0zinc finger CCCH domain-containing protein 39
RefseqXP_020889430.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT810.0C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLD7L9Y40.0D7L9Y4_ARALL; Zinc finger (CCCH-type) family protein
STRINGfgenesh2_kg.3__2153__AT3G19360.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.10.0C3H family protein