PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.6174s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 273aa MW: 29004.3 Da PI: 5.9616 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.4 | 7e-05 | 155 | 195 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq Araha.6174s0002.1.p 155 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 195 678889999*********999.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.1E-8 | 142 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-12 | 143 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.258 | 145 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.40E-4 | 153 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGDTAEDQDD RAMMEAEGAT SFSELLMFSD GVLSSSSDHQ REGNVGDGGE DSLGFVFSGK 60 TGSRMLCFSG GCQNDDESLF LEPSVPSAGV SVLDPSCIKI DSKNSNDACT VDKSTKSSNK 120 KRTGTGNGQE PDQNRKPGKK CKRNQDKSSS VGIAKVRKER LGERIAALQQ LVSPYGKTDA 180 ASVLHEAMGY IKFLQDQIQV LCSPYLINHS LDGGGVTGDV MAAMKAKDLR SRGLCLVPVS 240 STVHVENSNG ADFWSPATMG HTTSPSLPHQ RF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.6174s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084520 | 0.0 | AY084520.1 Arabidopsis thaliana clone 110428 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002885311.1 | 0.0 | transcription factor bHLH113 isoform X1 | ||||
Swissprot | Q9LT67 | 0.0 | BH113_ARATH; Transcription factor bHLH113 | ||||
TrEMBL | D7L9Z7 | 0.0 | D7L9Z7_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_3001848 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7402 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.6174s0002.1.p |
Publications ? help Back to Top | |||
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