PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.6161s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 163aa MW: 18973.5 Da PI: 7.5501 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.7 | 3.4e-30 | 13 | 145 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka..eekewyfFskrdkkya..tgkrknra....tksgyW 83 GfrFhP+d+el+ +yL +kv++++++++e +++diy ePw+L +++ + e +ew++F+k + ++ tgkr +r+ t +g W Araha.6161s0007.1.p 13 IGFRFHPSDQELILRYLGPKVAKRSNKEFELDDKTDIYAKEPWRLThTET-NffEPNEWFYFVKLTQLSEnvTGKRMSRKvkgeTCDGCW 101 6************************9999988889**********83333.245778*****9988866634799999974555669*** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +gk ++++ + +ge++g k++L fy + + ++ + W+m ey l Araha.6161s0007.1.p 102 KPSGKLRDIVLEdTGEVIGKKRSLSFYVKGE--SNASGWTMTEYYL 145 ********999878899**********4433..3579*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-32 | 10 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.036 | 11 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-18 | 13 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MSMVKYYDKE EHIGFRFHPS DQELILRYLG PKVAKRSNKE FELDDKTDIY AKEPWRLTHT 60 ETNFFEPNEW FYFVKLTQLS ENVTGKRMSR KVKGETCDGC WKPSGKLRDI VLEDTGEVIG 120 KKRSLSFYVK GESNASGWTM TEYYLQDGGL FHDQVLCHLK GP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.6161s0007.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB015473 | 1e-160 | AB015473.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCM23. | |||
GenBank | CP002688 | 1e-160 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020877802.1 | 1e-113 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | R0HBL0 | 4e-82 | R0HBL0_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006289517.1 | 6e-83 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14744 | 8 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18300.1 | 4e-47 | NAC domain containing protein 88 |
Link Out ? help Back to Top | |
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Phytozome | Araha.6161s0007.1.p |